Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_N16
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    46   6e-06
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    30   0.53 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   4.9  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    27   4.9  
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom...    26   6.5  

>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 46.4 bits (105), Expect = 6e-06
 Identities = 17/37 (45%), Positives = 27/37 (72%)
 Frame = +1

Query: 679 LVDYLKKFMSDVEAWQELCNLYLQVQDYSRAVFCAEE 789
           L++YL  F +D+EAW EL ++Y+ V+ +  A+FC EE
Sbjct: 128 LINYLDTFYNDLEAWAELADIYVSVEAFESAIFCYEE 164


>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 696 KVYVRCGSLARALQPVPSGSGLLSCRVLRR 785
           KV  +CGS+   L P P G+GL++  V +R
Sbjct: 156 KVSGKCGSVTVRLVPAPRGAGLVAAPVTKR 185


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 904 HRLTVXSLPTPDFRCRPLCTE 842
           HR+++ S+PT DF  R L T+
Sbjct: 816 HRISLKSVPTSDFSSRTLSTD 836


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 495 FPGSLRVMKLKAAVLEAEEKFDEALELLDNIIKVDE 602
           FP S  V      +L  ++KFD+A++  D+ I++++
Sbjct: 479 FPNSSEVYNYFGEILLDQQKFDDAVKNFDHAIELEK 514


>SPCC330.10 |pcm1||mRNA capping
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 389

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = -1

Query: 449 CDSPMLHRLLAPI*R---VSRFQVCLHLL*EPHPKVLALLCLSSHCFP 315
           C S  ++ LL P  R   V   Q C+H   E   KV  LL   S C P
Sbjct: 198 CFSSSINELLPPDQRKFDVVSLQFCMHYAFESEEKVRVLLGNVSKCLP 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,467,439
Number of Sequences: 5004
Number of extensions: 68102
Number of successful extensions: 208
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)