Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_N16
         (914 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077542-13|AAC26302.1|  294|Caenorhabditis elegans Hypothetical...    60   2e-09
Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AL021497-13|CAA16411.2|  550|Caenorhabditis elegans Hypothetical...    28   8.1  

>AF077542-13|AAC26302.1|  294|Caenorhabditis elegans Hypothetical
           protein Y57G7A.10a protein.
          Length = 294

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 29/66 (43%), Positives = 37/66 (56%)
 Frame = +1

Query: 685 DYLKKFMSDVEAWQELCNLYLQVQDYSRAVFCAEEXXXXXXXXXXXXXXXXDIRYTMGGI 864
           DYLK F++D EAW +L  L+L   D ++AV C EE                D+RYT GG 
Sbjct: 145 DYLKIFLNDPEAWLQLSELFLLENDVAKAVHCLEECVLISPLNSMYFRRLADLRYTQGGA 204

Query: 865 ENLELA 882
           EN+ELA
Sbjct: 205 ENVELA 210



 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 26/70 (37%), Positives = 43/70 (61%)
 Frame = +2

Query: 266 YEEISHNEAKDLLRQWRENNERRGKEVLELWDVVLREDVNKLGNEKHVILEQVIYAALDC 445
           + ++S++E +  L++WRE   RR  EV+E+W+ V+      LG+E+  +LEQV  AALD 
Sbjct: 6   WTQVSYDEGRQALKKWRECGVRRSDEVVEIWEHVISRSPASLGDEQWAVLEQVCIAALDA 65

Query: 446 HMYCIAMLCL 475
               +A  C+
Sbjct: 66  ARVDLAQDCI 75



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 20/64 (31%), Positives = 36/64 (56%)
 Frame = +3

Query: 483 LSNEFPGSLRVMKLKAAVLEAEEKFDEALELLDNIIKVDETNSXXXXXXXXXXXXQGYIV 662
           L  +FP S RV+KLKA  LE+ E + +AL++ + +++ +  N+            QG  +
Sbjct: 78  LHAQFPKSNRVLKLKAMQLESTEHYQKALDIYERLVEDEPNNNSFRKRKVAVLLAQGKRL 137

Query: 663 EAIQ 674
           +AI+
Sbjct: 138 DAIR 141


>Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical
           protein T05H10.1 protein.
          Length = 1326

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 274 NKPQ*SKGSSPSME-GKQ*EERQRSARTLGCGSQRRCKQTWKRETRYIGASNLC 432
           NK + S  SS   + GK   E +     LG  + +RC    +   RY G+ N+C
Sbjct: 329 NKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVC 382


>AL021497-13|CAA16411.2|  550|Caenorhabditis elegans Hypothetical
           protein Y51A2D.18 protein.
          Length = 550

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 183 KHLTTTKI*IILCDIQHVVGTY*LHVQHYLKNSI 82
           K + T+ + II+  +  VVG+Y LH+ H +K+ I
Sbjct: 393 KFIHTSGLVIIVLSLSLVVGSYALHLNHEMKDVI 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,396,428
Number of Sequences: 27780
Number of extensions: 393013
Number of successful extensions: 969
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)