Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_N15
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    66   6e-12
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    29   0.67 
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   4.8  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    27   4.8  
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    27   4.8  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 66.1 bits (154), Expect = 6e-12
 Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
 Frame = +3

Query: 195 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKA 374
           F++EP NV+  ++ R++GL + KAVGV  N  R    +     K  +KPAK L R+   A
Sbjct: 30  FNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAK-LFRKDVIA 88

Query: 375 GA-RRSLYK-VKRLLKANHYRTDLCKATLRRASAILRSQRPIK 497
            A  R  YK +   +    YR DL K ++ RASAIL SQRP K
Sbjct: 89  NASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRPKK 131



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 110 VKMSSSLNWMIIRNNNAFLXEEAQY 184
           + +S+ L W +IR+NN FL +  ++
Sbjct: 1   MSVSNDLIWQVIRDNNRFLVKRPEF 25


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 314 VHYCESLPVRVLHDTNSFLVNQAVVPEGVEVSHIVRLLAERLFD 183
           +HYC S  +  LHDT   LV       G + S +++     + D
Sbjct: 251 IHYCSSSSLSYLHDTERALVGSLTDSYGFKKSGLIKKTISLMID 294


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -2

Query: 854 PNLPLNLKHKMXAIGVVXLFIAXYKWYQIKQ*HHKFSQIKHFFHCIL 714
           PN+ L++   +   G +   +   +WY + + + + S+IKH  +C L
Sbjct: 392 PNIFLSIVQALVFCGDM---VNIQRWYNMSRVNSELSRIKHLLNCFL 435


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = -1

Query: 213 CSAPC*TAF*YCASSXRNALLLRMIIQFSDDDIFTGLNLFLHQTQRAHNVCVDKKAKILR 34
           C+  C   F  CA+  + A++ ++++       +  +   LHQ   +H     K   +LR
Sbjct: 93  CATSCLLCF-LCAAYPKYAIIFQLLVSLDLASHYMHMYSTLHQGASSHKTVTKKHNWMLR 151

Query: 33  IPY 25
           + Y
Sbjct: 152 LYY 154


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 88  PNTTCSQCVRRQK 50
           PNTTC QC+ R+K
Sbjct: 264 PNTTCPQCMARRK 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,296
Number of Sequences: 5004
Number of extensions: 55090
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)