Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_N15
         (894 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457024-1|CAG33305.1|  137|Homo sapiens RPL28 protein.               110   8e-24
BC011582-1|AAH11582.1|  137|Homo sapiens ribosomal protein L28 p...   110   8e-24
BC010182-1|AAH10182.1|  137|Homo sapiens ribosomal protein L28 p...   110   8e-24
BC010173-1|AAH10173.1|  137|Homo sapiens ribosomal protein L28 p...   110   8e-24
U14969-1|AAA85657.1|  137|Homo sapiens ribosomal protein L28 pro...   109   2e-23
AB209627-1|BAD92864.1|   95|Homo sapiens ribosomal protein L28 v...    56   1e-07
AB007179-1|BAA25838.1|   53|Homo sapiens ribosomal protein L28 p...    50   1e-05

>CR457024-1|CAG33305.1|  137|Homo sapiens RPL28 protein.
          Length = 137

 Score =  110 bits (264), Expect = 8e-24
 Identities = 54/111 (48%), Positives = 72/111 (64%)
 Frame = +3

Query: 174 KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNL 353
           KRN K+ +S EPNN+   +SFRYNGLIH+K VGV    D KG  VV K+    RKPA + 
Sbjct: 19  KRN-KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSY 77

Query: 354 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPIKAKK 506
           +R      AR +L  ++ +++ N YR DL  A +RRASAILRSQ+P+  K+
Sbjct: 78  VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVMVKR 128


>BC011582-1|AAH11582.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score =  110 bits (264), Expect = 8e-24
 Identities = 54/111 (48%), Positives = 72/111 (64%)
 Frame = +3

Query: 174 KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNL 353
           KRN K+ +S EPNN+   +SFRYNGLIH+K VGV    D KG  VV K+    RKPA + 
Sbjct: 19  KRN-KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSY 77

Query: 354 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPIKAKK 506
           +R      AR +L  ++ +++ N YR DL  A +RRASAILRSQ+P+  K+
Sbjct: 78  VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVMVKR 128


>BC010182-1|AAH10182.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score =  110 bits (264), Expect = 8e-24
 Identities = 54/111 (48%), Positives = 72/111 (64%)
 Frame = +3

Query: 174 KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNL 353
           KRN K+ +S EPNN+   +SFRYNGLIH+K VGV    D KG  VV K+    RKPA + 
Sbjct: 19  KRN-KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSY 77

Query: 354 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPIKAKK 506
           +R      AR +L  ++ +++ N YR DL  A +RRASAILRSQ+P+  K+
Sbjct: 78  VRTTINRNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVMVKR 128


>BC010173-1|AAH10173.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score =  110 bits (264), Expect = 8e-24
 Identities = 54/111 (48%), Positives = 72/111 (64%)
 Frame = +3

Query: 174 KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNL 353
           KRN K+ +S EPNN+   +SFRYNGLIH+K VGV    D KG  VV K+    RKPA + 
Sbjct: 19  KRN-KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSY 77

Query: 354 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPIKAKK 506
           +R      AR +L  ++ +++ N YR DL  A +RRASAILRSQ+P+  K+
Sbjct: 78  VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVMVKR 128


>U14969-1|AAA85657.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score =  109 bits (261), Expect = 2e-23
 Identities = 53/111 (47%), Positives = 72/111 (64%)
 Frame = +3

Query: 174 KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNL 353
           KRN K+ +S EPNN+   +SFRYNGLIH+K VGV    D KG  VV K+    RKPA + 
Sbjct: 19  KRN-KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSY 77

Query: 354 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPIKAKK 506
           +R      AR +L  ++ +++ N YR DL  A +RRASAILR+Q+P+  K+
Sbjct: 78  VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRTQKPVMVKR 128


>AB209627-1|BAD92864.1|   95|Homo sapiens ribosomal protein L28
           variant protein.
          Length = 95

 Score = 56.4 bits (130), Expect = 1e-07
 Identities = 28/49 (57%), Positives = 34/49 (69%)
 Frame = +3

Query: 174 KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKK 320
           KRN K+ +S EPNN+   +SFRYNGLIH+K VGV    D KG  VV K+
Sbjct: 27  KRN-KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKR 74


>AB007179-1|BAA25838.1|   53|Homo sapiens ribosomal protein L28
           protein.
          Length = 53

 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 22/50 (44%), Positives = 32/50 (64%)
 Frame = +3

Query: 354 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPIKAK 503
           +R      AR +L  ++ +++ N YR DL  A +RRASAILRSQ+P+  K
Sbjct: 4   VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVMVK 53


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,906,452
Number of Sequences: 237096
Number of extensions: 2147623
Number of successful extensions: 10417
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10417
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)