Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_N14
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   134   8e-32
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   116   3e-26
AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl t...    29   3.5  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    29   6.0  
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  134 bits (324), Expect = 8e-32
 Identities = 64/85 (75%), Positives = 72/85 (84%)
 Frame = +1

Query: 316 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMS 495
           RWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMS
Sbjct: 84  RWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMS 143

Query: 496 SPCHIEVCLSEREDAVARVAPTDDA 570
           SPCHIEV L+E+ED V++  PTDDA
Sbjct: 144 SPCHIEVILAEKEDVVSK--PTDDA 166



 Score = 87.8 bits (208), Expect = 9e-18
 Identities = 39/58 (67%), Positives = 47/58 (81%)
 Frame = +3

Query: 141 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQG 314
           VHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF+GG+GR AQ KQ+ TTQG
Sbjct: 26  VHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTTQG 83



 Score = 36.7 bits (81), Expect = 0.023
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +2

Query: 80  YSREPDNPAKSCKARGSNLR 139
           YSR P+N  KSCKARGS+LR
Sbjct: 6   YSRAPENSTKSCKARGSDLR 25


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  116 bits (278), Expect = 3e-26
 Identities = 56/75 (74%), Positives = 63/75 (84%)
 Frame = +1

Query: 346 LQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 525
           L LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125

Query: 526 EREDAVARVAPTDDA 570
           E+ED V++  PTDDA
Sbjct: 126 EKEDVVSK--PTDDA 138



 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 27/40 (67%), Positives = 32/40 (80%)
 Frame = +3

Query: 141 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 260
           VHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 26  VHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65



 Score = 36.7 bits (81), Expect = 0.023
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +2

Query: 80  YSREPDNPAKSCKARGSNLR 139
           YSR P+N  KSCKARGS+LR
Sbjct: 6   YSRAPENSTKSCKARGSDLR 25


>AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl trna
           synthetase protein2 protein.
          Length = 551

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -2

Query: 643 LMSIPSSSSPFDAQAFSWKAFSSLGHHQ*GLP*RQHLRVR*DILRCGRETTCRG 482
           L+S   +   F + A+  +A ++L  H+  L    HL  + D+LRC R T+C G
Sbjct: 334 LLSGEGADELFGSYAYMQRAPNALHLHKEILRRMHHLH-QYDVLRCDRSTSCHG 386


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = +1

Query: 319 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 480
           W K+    +  LL  AE++    + D+D++V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 481 NPYMSSPCHIEVCLSER 531
           NP+  SPC ++   S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -2

Query: 508 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACQRPKFCC 380
           CG +T  R  C  +    +C G   +L  C   +     K CC
Sbjct: 40  CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,500,152
Number of Sequences: 27780
Number of extensions: 308484
Number of successful extensions: 818
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)