Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_N12
(942 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 35 0.014
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 28 2.2
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 28 2.2
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 27 2.9
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 27 2.9
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 27 3.8
SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|ch... 27 3.8
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 27 5.1
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 8.8
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 26 8.8
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 35.1 bits (77), Expect = 0.014
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 5/138 (3%)
Frame = +1
Query: 259 GRPAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGLIAAS---QLTSKVIVAVGIDLPE 429
G+ A ++ IK I+ +GF G Y+GLSA +LG+ ++ L K AV I
Sbjct: 197 GQAAQYRSSIDCIIKTIRL-EGFRGLYKGLSASLLGVGESTLQWVLYEKFKHAVAIRQLR 255
Query: 430 INDPPNIVTDDEPKVEDY-IKLGRRDMIMQTVAVVIAHPFHVVSVRMMAS-FIGKEEHYS 603
+ I KV D+ KLG I + +A IA+P VV R+ S I Y+
Sbjct: 256 RKE-LGIQETIYDKVLDWGGKLGGAG-IAKFMAAGIAYPHEVVRTRLRQSPSINGTPKYT 313
Query: 604 SLLGAIVSIYKDDGILGI 657
L+ ++ + GI+G+
Sbjct: 314 GLIQCFKLVWMEQGIVGL 331
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.9 bits (59), Expect = 2.2
Identities = 26/127 (20%), Positives = 51/127 (40%)
Frame = +1
Query: 151 LHKYLLQQYAIPWXYAKVLIQLGYEPLAPRRSTTLFGRPAMILPNVFQYIKYIKASDGFF 330
LH +++Q PW ++ GY PLA + G + L + F+YI
Sbjct: 3666 LHPSVIKQCEFPWSFSSESTDTGY-PLALEIEEDVDGTMNLHLSSNFKYI----GQTEII 3720
Query: 331 GCYRGLSARMLGLIAASQLTSKVIVAVGIDLPEINDPPNIVTDDEPKVEDYIKLGRRDMI 510
G + L+ S +I+ PN++ ++P+V+ YI D++
Sbjct: 3721 GLLDSYDCYLSSLLETSN-------------AKISSRPNVLMPNQPEVKQYIPNVWNDVL 3767
Query: 511 MQTVAVV 531
+ + ++
Sbjct: 3768 KKLITIL 3774
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 259 GRPAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGLI 372
G+ M+L ++ I ++G G YRG+ MLG +
Sbjct: 45 GKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMMLGYL 82
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 484 IKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKE 591
+K+G +D V AHPFHVV + M S G +
Sbjct: 77 VKIGGKDSFHLRVR---AHPFHVVRINKMLSCAGAD 109
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 484 IKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKE 591
+K+G +D V AHPFHVV + M S G +
Sbjct: 77 VKIGGKDSFHLRVR---AHPFHVVRINKMLSCAGAD 109
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 27.1 bits (57), Expect = 3.8
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = +2
Query: 770 YTIPLLTFITSTITYPMVVVSTCMAVAGLV 859
+++P L F+TS +P+ + +T + G++
Sbjct: 604 FSLPELDFLTSVFNFPLALRNTATRILGII 633
>SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 677 KVLGDLTCLAVTGVLAYYVNKYF 745
++ D+TC V L Y+VNK+F
Sbjct: 66 EIANDVTCGRVETALLYFVNKFF 88
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 644 VSLGFLHGLIPKVLGDLTCLAVTGVLAYYVNKYFVKTKDL 763
VS ++G G L CLA++ + Y + KTKD+
Sbjct: 681 VSANSVYGFTGATNGRLPCLAISSSVTSYGRQMIEKTKDV 720
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.8 bits (54), Expect = 8.8
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +2
Query: 719 LAYYVNKYFVKTKDLRYYTIPLLTFITSTITYPMVVVSTCM 841
L +Y + F+ + +YT+ + + S T+ +++ STC+
Sbjct: 1021 LLFYCSSIFISKE---FYTVEQMVQVLSLATFTLLMASTCI 1058
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.8 bits (54), Expect = 8.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 531 NDCYRLHDHVSAS*FDVIFNLGFIIGDDV 445
NDC R ++H + S F + + F+ DD+
Sbjct: 635 NDCTRFYEHPTLSVFVKVEGIDFMKDDDI 663
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,900,699
Number of Sequences: 5004
Number of extensions: 84599
Number of successful extensions: 212
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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