Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_N12
(942 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0148 - 5928703-5928931,5929099-5929171,5929288-5929408,592... 33 0.33
01_07_0386 + 43218686-43218745,43218972-43219190,43219307-432193... 33 0.44
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 32 0.76
02_02_0469 + 10691648-10691692,10691755-10691907,10692043-106920... 31 1.0
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733 30 2.3
09_04_0551 - 18488584-18490017 30 3.1
07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819... 29 4.1
03_02_0646 + 10141967-10142476,10143721-10144254 29 4.1
04_03_0743 + 19231835-19232204,19232889-19233061,19233200-192332... 29 7.1
12_02_1218 - 27088206-27088214,27088577-27088643,27088755-270888... 28 9.4
>03_02_0148 -
5928703-5928931,5929099-5929171,5929288-5929408,
5929907-5929952,5930361-5930571,5930837-5930986,
5931122-5931179,5931285-5931400,5931986-5932091
Length = 369
Score = 33.1 bits (72), Expect = 0.33
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +1
Query: 283 NVFQYIKYIKASDGFFGCYRGLSARMLGLIAASQLTSKVIVAVGIDLPEINDPPNI 450
N+FQ I+ + SDG G YRG+S + G +A VI + L N PN+
Sbjct: 78 NIFQMIRTVWVSDGLKGFYRGISPGVTGSLATGATYFGVIESTKTWLEHSN--PNL 131
>01_07_0386 +
43218686-43218745,43218972-43219190,43219307-43219391,
43219583-43219713,43219802-43219900,43219984-43220088,
43220190-43220264,43222006-43222092,43222129-43222173
Length = 301
Score = 32.7 bits (71), Expect = 0.44
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +1
Query: 520 VAVVIAHPFHVVSVRMMASFIGK----EEHYSSLLGAIVSIYKDDGI 648
+A+V+A+P +V VR+ A GK + HYS L A +I + +GI
Sbjct: 124 IAIVVANPTDLVKVRLQAD--GKATTVKRHYSGALNAYATIIRQEGI 168
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 31.9 bits (69), Expect = 0.76
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 328 FGCYRGLSARMLGLIAASQLTSKVIVAVGIDLPEINDPPNI 450
FGC L + +IA S+ +++ V +P ++DPP +
Sbjct: 84 FGCLLALDEKTFNVIALSENAPEMLTTVSHAVPSVDDPPKL 124
>02_02_0469 +
10691648-10691692,10691755-10691907,10692043-10692093,
10692162-10692224,10692327-10693031,10693128-10693223,
10693307-10695547
Length = 1117
Score = 31.5 bits (68), Expect = 1.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 285 RFPVYKVHKGFGWFLRLLQGLISKNAWSYRRKSTHIEGNSS 407
+FP + + F + LL G + K +Y+RK H+E N S
Sbjct: 464 KFPSLQAAQRFYYAHALLTGFVGKRGTNYKRKKFHLECNKS 504
>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
Length = 329
Score = 30.3 bits (65), Expect = 2.3
Identities = 19/77 (24%), Positives = 31/77 (40%)
Frame = +1
Query: 151 LHKYLLQQYAIPWXYAKVLIQLGYEPLAPRRSTTLFGRPAMILPNVFQYIKYIKASDGFF 330
L + +A+ W Y RR L + N F K I +++GFF
Sbjct: 224 LQENFFASFALGWAITTFSGACAYPFDTLRRRMMLTSGQPLKYKNAFHAAKQIVSTEGFF 283
Query: 331 GCYRGLSARMLGLIAAS 381
+RG+ A +L +A +
Sbjct: 284 TLFRGVGANILSGMAGA 300
>09_04_0551 - 18488584-18490017
Length = 477
Score = 29.9 bits (64), Expect = 3.1
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +1
Query: 265 PAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGLIAASQLTSKVIVAVGID-LPEINDP 441
P M+L +VF Y A + A +A + ++SK V LP I DP
Sbjct: 18 PMMVLADVFLDHGYAVAVALINPSVKDDDAAFTAAVARA-VSSKSSATVSFHMLPRIPDP 76
Query: 442 PNIVTDDEPKVEDYIKLGRR 501
P++ DD+ +Y L RR
Sbjct: 77 PSLAFDDDKFFTNYFDLVRR 96
>07_03_1339 +
25879246-25881154,25881502-25881696,25881777-25881928,
25882147-25882607,25883723-25883810,25884066-25884135,
25884288-25884361,25884456-25884524,25884647-25884724,
25884946-25885070,25885168-25885240,25885508-25885566,
25885650-25886027,25886134-25886236,25886332-25886544
Length = 1348
Score = 29.5 bits (63), Expect = 4.1
Identities = 21/82 (25%), Positives = 39/82 (47%)
Frame = +3
Query: 111 NMDEIEKERIAALPSQILVTTICHPMXIRKSFNPAWVRAFGSAPVHDPVWPPSHDIT*RF 290
N+D+++ E+ + S + + HP R+SF + A G++P V PP T
Sbjct: 654 NVDDVKPEQATSKLSGSDASKVVHPPARRRSFGRSDSTARGNSPKERMVPPPQKPATTSL 713
Query: 291 PVYKVHKGFGWFLRLLQGLISK 356
+ + + F L+ +Q L+ K
Sbjct: 714 RIDRFVRPF--TLKAVQELLGK 733
>03_02_0646 + 10141967-10142476,10143721-10144254
Length = 347
Score = 29.5 bits (63), Expect = 4.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 517 TVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGI 648
T + PF VV R+MA + Y ++ AI +IY ++G+
Sbjct: 262 TAGPICTGPFDVVKTRLMAQGRTGDIKYKGMVHAIRTIYTEEGL 305
>04_03_0743 +
19231835-19232204,19232889-19233061,19233200-19233297,
19233970-19234107,19234266-19234455,19234875-19235007,
19235095-19236029
Length = 678
Score = 28.7 bits (61), Expect = 7.1
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +2
Query: 605 HCWAL*SLFTRTTVSLGFLHGLIPKVLGDLTCLAVTGVLAYYVNKYF 745
HC A+ S+F + + L + PK + L + + +Y+ YF
Sbjct: 566 HCLAICSVFFVAAILINLLRDVTPKSVSKFIPLPMAMAVPFYIGAYF 612
>12_02_1218 -
27088206-27088214,27088577-27088643,27088755-27088821,
27088934-27089054,27089272-27089351,27089574-27089686,
27090305-27090420,27090507-27090575,27090684-27090758,
27090836-27090880,27091100-27091187,27091488-27091570,
27091655-27091705,27091848-27091905,27092019-27092201,
27092385-27092546,27092713-27093029
Length = 567
Score = 28.3 bits (60), Expect = 9.4
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 463 EPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIV 624
E K+E + KL D ++ + + H +H+ V M + K +S LLG ++
Sbjct: 162 EEKLEKFCKL--MDFVIDSPPPEMRHEYHLSMVDRMKDKVDKSVFWSKLLGIVM 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,219,981
Number of Sequences: 37544
Number of extensions: 544102
Number of successful extensions: 1251
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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