Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_N12
         (942 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000264-10|AAC71129.2|  272|Caenorhabditis elegans Hypothetical...    45   9e-05
AF000264-8|AAK70649.2|  165|Caenorhabditis elegans Hypothetical ...    39   0.005
Z79755-2|CAB02107.1|  294|Caenorhabditis elegans Hypothetical pr...    36   0.042
Z49207-2|CAA89069.1|  298|Caenorhabditis elegans Hypothetical pr...    33   0.30 
U64857-6|AAN84847.1|  172|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z66567-9|CAA91495.1| 1268|Caenorhabditis elegans Hypothetical pr...    29   6.4  
Z66562-7|CAA91467.1| 1268|Caenorhabditis elegans Hypothetical pr...    29   6.4  
X65055-1|CAA46191.1| 1254|Caenorhabditis elegans P-glycoprotein ...    29   6.4  
Z75532-5|CAD56651.1|  360|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z75532-4|CAA99811.1|  310|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>AF000264-10|AAC71129.2|  272|Caenorhabditis elegans Hypothetical
           protein F43E2.7a protein.
          Length = 272

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
 Frame = +1

Query: 286 VFQYIKYIKASDGFFGCYRGLSARMLGLIAASQLTSKVIVAVGIDLPEINDPPNIVTDDE 465
           +   +K +  + G+   + G+ + +  L      + +    +    P I  P      +E
Sbjct: 2   IINLVKQLGTTRGYITLWTGIDSAIAALAVQGIASHRTQQYIDEYYPNIGGPLLNQDKEE 61

Query: 466 PKVED------YIKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVS 627
            ++ D       I+ G RD +++ VAV  A PF V   R +A  IG E  Y++   A+  
Sbjct: 62  DELTDAESFRRVIRNGFRDSVIRVVAVTAARPFAVCFARQVAQVIGNETKYTTCAQALAV 121

Query: 628 IYKDDGILGILA 663
           I K +G  G+ +
Sbjct: 122 IGKQEGPGGLFS 133



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 755 KDLRYYTIPLLTFITSTITYPMVVVSTCMAVAG 853
           KD+  +    + F+ ++  YP  VVST MAVAG
Sbjct: 180 KDVHKFIHTAVPFLVNSFGYPYSVVSTVMAVAG 212


>AF000264-8|AAK70649.2|  165|Caenorhabditis elegans Hypothetical
           protein F43E2.11 protein.
          Length = 165

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 184 PWXYAKVLIQLGYEPLAPR--RSTTLFGRPAMILPNVFQYIKYIKASDGFFGCYRGLSA 354
           P    + LIQ GYEP      R    FG    ILPN+  Y+K +  +  F   ++GL +
Sbjct: 85  PITVVRELIQFGYEPFPTTCGRKYIFFGEEMAILPNILSYMKQLSKAKKFSTLFKGLDS 143


>Z79755-2|CAB02107.1|  294|Caenorhabditis elegans Hypothetical
           protein F43G9.3 protein.
          Length = 294

 Score = 35.9 bits (79), Expect = 0.042
 Identities = 30/122 (24%), Positives = 47/122 (38%)
 Frame = +1

Query: 283 NVFQYIKYIKASDGFFGCYRGLSARMLGLIAASQLTSKVIVAVGIDLPEINDPPNIVTDD 462
           +  ++IK     +GFF  YRG SA M          ++V+    +          ++  D
Sbjct: 54  SAIKFIKLTYRENGFFALYRGNSATM----------ARVVPYASMQFAAFEQYKKLLKVD 103

Query: 463 EPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDD 642
           E      +K      +  T A +I +P      R+  S    +  YSSL    V  YK+ 
Sbjct: 104 ENGSRTPVKRYITGSLAATTATMITYPLDTAKARLSVS---SKLQYSSLKHVFVKTYKEG 160

Query: 643 GI 648
           GI
Sbjct: 161 GI 162


>Z49207-2|CAA89069.1|  298|Caenorhabditis elegans Hypothetical
           protein R07E3.4 protein.
          Length = 298

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 28/119 (23%), Positives = 53/119 (44%)
 Frame = +1

Query: 298 IKYIKASDGFFGCYRGLSARMLGLIAASQLTSKVIVAVGIDLPEINDPPNIVTDDEPKVE 477
           +K IKAS+G    Y+GLS+ +  +IA+  +   +  ++   +            ++PK  
Sbjct: 163 LKKIKASEGVASWYKGLSSALQFVIASRAIFFGIFDSIRTSV------------EDPKSL 210

Query: 478 DYIKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILG 654
           ++        I  T + ++ +P   V   MM     + + Y+S      ++YK DGI G
Sbjct: 211 NFAACWAIAQISITTSGMVCYPLDTVRRSMMMQSGKQIKQYTSTKDCWKTLYKKDGING 269


>U64857-6|AAN84847.1|  172|Caenorhabditis elegans Hypothetical
           protein C37C3.12 protein.
          Length = 172

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 811 CYCACYKCKQWNRVISK 761
           CYC C KCK++NR+  K
Sbjct: 107 CYCCC-KCKEYNRIHKK 122


>Z66567-9|CAA91495.1| 1268|Caenorhabditis elegans Hypothetical
           protein ZK455.7 protein.
          Length = 1268

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/62 (20%), Positives = 29/62 (46%)
 Frame = +2

Query: 665 GLIPKVLGDLTCLAVTGVLAYYVNKYFVKTKDLRYYTIPLLTFITSTITYPMVVVSTCMA 844
           G+  +V+  +  +       + +N+Y  +  + R   I     +     +P++++ TCMA
Sbjct: 236 GMANEVIAGIRTVMAFNAQPFEINRYAHQLNEARRMGIRKAIILAICTAFPLMLMFTCMA 295

Query: 845 VA 850
           VA
Sbjct: 296 VA 297


>Z66562-7|CAA91467.1| 1268|Caenorhabditis elegans Hypothetical
           protein ZK455.7 protein.
          Length = 1268

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/62 (20%), Positives = 29/62 (46%)
 Frame = +2

Query: 665 GLIPKVLGDLTCLAVTGVLAYYVNKYFVKTKDLRYYTIPLLTFITSTITYPMVVVSTCMA 844
           G+  +V+  +  +       + +N+Y  +  + R   I     +     +P++++ TCMA
Sbjct: 236 GMANEVIAGIRTVMAFNAQPFEINRYAHQLNEARRMGIRKAIILAICTAFPLMLMFTCMA 295

Query: 845 VA 850
           VA
Sbjct: 296 VA 297


>X65055-1|CAA46191.1| 1254|Caenorhabditis elegans P-glycoprotein C
           protein.
          Length = 1254

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/62 (20%), Positives = 29/62 (46%)
 Frame = +2

Query: 665 GLIPKVLGDLTCLAVTGVLAYYVNKYFVKTKDLRYYTIPLLTFITSTITYPMVVVSTCMA 844
           G+  +V+  +  +       + +N+Y  +  + R   I     +     +P++++ TCMA
Sbjct: 236 GMANEVIAGIRTVMAFNAQPFEINRYAHQLNEARRMGIRKAIILAICTAFPLMLMFTCMA 295

Query: 845 VA 850
           VA
Sbjct: 296 VA 297


>Z75532-5|CAD56651.1|  360|Caenorhabditis elegans Hypothetical
           protein C54G10.4b protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 289 FQYIKYIKASDGFFGCYRGLSARMLGLIAASQLTSKVIVAVGIDLPEINDPPNIVT 456
           F   K I   +GF G Y+G+S+ +L L   S + + V    G    ++ DP +I +
Sbjct: 45  FHCFKLIVQKEGFRGLYKGMSSPLLSL---SAINAIVFGVHGGTCRQMEDPDSITS 97


>Z75532-4|CAA99811.1|  310|Caenorhabditis elegans Hypothetical
           protein C54G10.4a protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 289 FQYIKYIKASDGFFGCYRGLSARMLGLIAASQLTSKVIVAVGIDLPEINDPPNIVT 456
           F   K I   +GF G Y+G+S+ +L L   S + + V    G    ++ DP +I +
Sbjct: 45  FHCFKLIVQKEGFRGLYKGMSSPLLSL---SAINAIVFGVHGGTCRQMEDPDSITS 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,463,453
Number of Sequences: 27780
Number of extensions: 466516
Number of successful extensions: 1127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)