Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_N12
         (942 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    30   0.026
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    30   0.026
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          25   1.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   2.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   2.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   9.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   9.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   9.3  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 30.3 bits (65), Expect = 0.026
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 463 EPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVR-MMASFIGKEE-HYSSLLGAIVSIYK 636
           +PK   ++       ++ TVA ++++PF  V  R MM S   K E  Y S L    +IYK
Sbjct: 206 DPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYK 265

Query: 637 DDG 645
            +G
Sbjct: 266 TEG 268



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +1

Query: 523 AVVIAHPFHVVSVRMMASF--IGKEEHYSSLLGAIVSIYKDDGILGI 657
           ++   +P      R+ A     G E  ++ L   +  I+K DGI G+
Sbjct: 129 SLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGL 175


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 30.3 bits (65), Expect = 0.026
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 463 EPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVR-MMASFIGKEE-HYSSLLGAIVSIYK 636
           +PK   ++       ++ TVA ++++PF  V  R MM S   K E  Y S L    +IYK
Sbjct: 206 DPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYK 265

Query: 637 DDG 645
            +G
Sbjct: 266 TEG 268



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +1

Query: 523 AVVIAHPFHVVSVRMMASF--IGKEEHYSSLLGAIVSIYKDDGILGI 657
           ++   +P      R+ A     G E  ++ L   +  I+K DGI G+
Sbjct: 129 SLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGL 175


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 811 CYCACYKCK 785
           CYC C KCK
Sbjct: 2   CYCTCEKCK 10


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 579 YWERRTLQLTVG 614
           +WERRTLQ++ G
Sbjct: 187 FWERRTLQISDG 198


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 579 YWERRTLQLTVG 614
           +WERRTLQ++ G
Sbjct: 240 FWERRTLQISDG 251


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +2

Query: 722 AYYVNKYFVKTKDLRYYTIPLLTFITSTITY 814
           AYY++++  +  DL YY   +L  + + + +
Sbjct: 181 AYYLHQFAPEQPDLNYYNPVVLDDMQNVLRF 211


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +1

Query: 196 AKVLIQLGYEP 228
           AK+L+Q+G+EP
Sbjct: 163 AKLLLQMGFEP 173


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +2

Query: 722 AYYVNKYFVKTKDLRYYTIPLLTFITSTITY 814
           AYY++++  +  DL YY   +L  + + + +
Sbjct: 181 AYYLHQFAPEQPDLNYYNPVVLDDMQNVLRF 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,354
Number of Sequences: 438
Number of extensions: 6324
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)