Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_N11
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    28   2.1  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   6.5  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    26   8.6  

>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 470 KMYDKIKIGEVIYFSYLLKKVLKEEALPTIEHQFHPLLDQQQSI-LKVILLNNEELCTDL 646
           KMY    + + +YF  L K +L++  L   EHQF  +  + Q I LK I    + L    
Sbjct: 488 KMYLLENLSDRLYFCKLAKLLLRKYPLDIAEHQFALVYSRFQRIPLKQISCLKQSLVAYY 547

Query: 647 KICS 658
            + S
Sbjct: 548 SVLS 551


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 320 RTGKKKNYQMPLSFFQPTTPTRLINWTK 403
           +TG K N+Q  ++F + T  TR++N  K
Sbjct: 825 KTGNKDNFQNMINFDKRTKVTRILNEIK 852


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 557 IEHQFHPLLDQQQSILKVILLNNE 628
           I+ +F P L  + SILK ILLN+E
Sbjct: 415 IQPEFLPPLSWEYSILKNILLNDE 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,177,809
Number of Sequences: 5004
Number of extensions: 40962
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)