Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_N10
         (916 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0254 + 3388215-3388553,3388869-3390830                           31   0.97 
07_03_1781 + 29468919-29468951,29469057-29469184,29469349-294694...    30   2.9  
06_03_0442 + 20837492-20837621,20841842-20842075,20842435-208425...    30   2.9  
06_01_1118 - 9213785-9215051,9215811-9215992,9216075-9216611,921...    29   3.9  
03_01_0167 + 1374578-1375243,1375895-1376277,1377947-1378007,137...    29   5.2  
02_05_1090 - 34027737-34028582                                         29   6.8  

>04_01_0254 + 3388215-3388553,3388869-3390830
          Length = 766

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +2

Query: 551 YWHVSDWKHSAEDVSKVEYQFQNL--FNGNRDLAKTIHDFANSNWREIFQEVAPPHGSRL 724
           +W  S WK +A + + +EY++ N    + +RD    + D    N    F E  PP   +L
Sbjct: 401 FWS-SWWKKNAPEEAWMEYEYHNSRGIHISRDFRNKLFDRVWKNMELAFPERIPP--VQL 457

Query: 725 SSPRIIH 745
           S P+ IH
Sbjct: 458 SDPKWIH 464


>07_03_1781 +
           29468919-29468951,29469057-29469184,29469349-29469433,
           29469771-29469824,29470072-29470163,29470280-29470383,
           29470811-29470886,29471231-29471678,29471874-29471916,
           29471977-29472209,29472302-29472505,29472595-29472693,
           29472789-29472861,29473373-29473500,29473614-29473836,
           29473992-29474215,29474296-29474423,29475053-29475167,
           29475603-29475658,29475795-29475888,29475966-29476152,
           29476229-29476309,29476384-29476484,29476567-29476629,
           29476800-29476907
          Length = 1059

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 23/80 (28%), Positives = 40/80 (50%)
 Frame = +1

Query: 586 GRLQSRIPVPEFV*RQP*FGEDNPRFREQQLAGNLSGGGSSPWVKAIVSKNNSRNIQTVR 765
           GR    IP+ +FV +Q     +   F ++ +   L+GG     V + +S N +  ++ + 
Sbjct: 423 GRESQSIPLKKFVVKQ-----NAAPFMQRNMKWRLTGG-----VPSEMSMNENYTVERIY 472

Query: 766 *GAYQGSSIRINNATVGSMT 825
              YQ SS+RI +AT   +T
Sbjct: 473 IAGYQDSSVRIWDATFPVLT 492


>06_03_0442 +
           20837492-20837621,20841842-20842075,20842435-20842528,
           20842653-20842870,20842956-20843095,20843231-20843878
          Length = 487

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -2

Query: 522 TSRIIFIMMSRILILYFP-----VPSMGSISSWPPNVYSPTSVTEHFRSRRVLSY 373
           T R  F+++S +L +  P     +  +G++  WP  VY P  V  + R RR+  Y
Sbjct: 392 TWRTAFVVVSTVLAIVMPFFNDILGFLGAVGFWPLTVYYP--VEMYIRQRRIQRY 444


>06_01_1118 -
           9213785-9215051,9215811-9215992,9216075-9216611,
           9216742-9217224
          Length = 822

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -2

Query: 579 LCFQSLTCQYLSPSTILSSTSRIIFIMMSRILILYFPVPSMGS 451
           LC   +  QY +P  ++ + S ++F+++  +   YFP P+  S
Sbjct: 7   LCNFRVKKQYYNPRCLIPAVSLLLFVVILTVSNTYFPFPTTKS 49


>03_01_0167 +
           1374578-1375243,1375895-1376277,1377947-1378007,
           1378721-1379386
          Length = 591

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -1

Query: 304 QASLDGVHPAHGHRIHG--FNTEI-GD--SRCEKRYRLLR*GLQTSR 179
           Q + D +HP HGH + G  F   + GD  S  ++RYR L  G    R
Sbjct: 541 QMAPDAMHPGHGHHVVGGQFGVAMDGDAASHAQERYRSLSAGFHLLR 587


>02_05_1090 - 34027737-34028582
          Length = 281

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 207 FCAEDFRQAVSFGRHGVINFAKS 139
           FC+ED+   V F + G++N  +S
Sbjct: 136 FCSEDYPSEVGFSQEGIVNLVQS 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,967,924
Number of Sequences: 37544
Number of extensions: 502317
Number of successful extensions: 1449
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1447
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)