Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_N09
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    29   1.2  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    28   1.6  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    27   2.7  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    27   4.8  
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch...    26   6.3  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    26   6.3  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    26   6.3  

>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +2

Query: 437 KTEDEFCNVKKEGESSSDTKSDEDNKDQS-YQSSLWPWDSVRNKLRSALTEVSVLADVLN 613
           K +  F ++   GE    TKS  DN  QS  +SS +P  +V  K   A  E S +A+   
Sbjct: 435 KVQVRFGSLTLGGEDKKSTKSSSDNIAQSGPRSSYFPKKTVSPK-PEAKKEASKVAESTK 493

Query: 614 IAKEKRYMVLDPVQPE 661
           I K++     +   P+
Sbjct: 494 IPKKQHTSAYESRAPQ 509


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +2

Query: 446 DEFCNVKKEGESSSDTKSDEDNKDQSYQSSLWPWDSVRNKLRSALTEVSVLADVLNIAKE 625
           D+ C  K+   +  + +SD     QS  S+LW      NKL+ +  E S   D  NI +E
Sbjct: 243 DQLCKQKEVFSAEKEKRSDHLKSIQSEVSNLW------NKLQVSPNEQSQFGDSSNINQE 296


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 458 NVKKEGESSSDTKSDEDNKDQ--SYQSSLWPWDSVRNKLRSALTEVSVL 598
           N K+E  S +DT++D   +DQ  SY S+L  ++     L  +L + S+L
Sbjct: 512 NTKQENNSDTDTENDSVEEDQVTSYSSALERFNRRIRLLYDSLPKGSLL 560


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 290 KMANSV-NISIEAPIENQIQEITYDGQEIYQAPLSMSENLARLAQKI 427
           K  N + N+SIE   ++    +T D +++ QA ++  ENL +   KI
Sbjct: 358 KSKNKIGNVSIEEGQKDVKSPVTVDKEKVRQAIVNSMENLIKAEPKI 404


>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
           Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 581 TEVSVLADVLNIAKEKRYMVLDPVQPEKVE 670
           TE  VL  ++ I KEK YM+++ +  E++E
Sbjct: 8   TENGVLTPLITI-KEKAYMIIEGLNEEEIE 36


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 503 EDNKDQSYQSSLWPWDSVRNKLRSALTEVSVLADVLNIAKEKRYMVLDPVQ 655
           EDN     Q +L  WDS+ N   S  +E +++  +  +   KR + + P+Q
Sbjct: 276 EDNSGNQMQEALLLWDSICNS--SWFSESAMILFLNKLDLFKRKVHISPIQ 324


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 389 SMSENLARLAQKIDFSKTEDEFCNVKKEGESSSDTKSDEDNKDQSYQSSLWP 544
           S  +N + L + I   + E    + K +G  +     +ED+  QS+ SSL P
Sbjct: 175 SNHDNESTLTEGIALKEIESPDKDRKADGIVNLSVTQEEDDNHQSFNSSLTP 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,905
Number of Sequences: 5004
Number of extensions: 54496
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)