Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_N09
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1058 - 9292890-9293655,9293831-9294600                           32   0.71 
10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754...    29   3.8  
03_01_0222 - 1756769-1756801,1756889-1756917,1756975-1757859,175...    29   5.0  
02_05_1167 - 34638709-34639104,34640653-34642158                       29   6.6  
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294...    28   8.8  

>07_01_1058 - 9292890-9293655,9293831-9294600
          Length = 511

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
 Frame = -3

Query: 823 HENLSSLCXIWHVPRHPHGLAGSETFHA--GLKD----GSGGAQCLLPSVDLNHGSTFNF 662
           H   S L   W +   PH +   + FHA  G K+    G GG + LL    +++GS   +
Sbjct: 216 HRRYSELLEDWEIEFGPHRVLYKDLFHATEGFKNSCILGIGGGELLLVYDYMSNGSLDRY 275

Query: 661 FR-------LDWVK--HHIPLLLSNIQYISQ 596
                    LDWVK  H I  + S + Y+ +
Sbjct: 276 LHDEEGQCSLDWVKRIHIIKGVASGLLYLHE 306


>10_08_0259 +
           16274430-16274747,16275180-16275242,16275329-16275424,
           16275526-16275618,16276415-16276605,16276684-16276921,
           16277805-16277900,16278324-16278404,16278532-16278939,
           16279048-16279331,16279460-16279547,16279630-16279830,
           16280032-16280118,16280119-16280238,16280536-16280708,
           16281914-16282055,16282292-16282414,16282601-16282656,
           16282735-16283038,16283154-16283283,16283491-16283549,
           16283829-16284061,16285480-16285527,16285765-16285843,
           16285925-16286169,16286338-16286722
          Length = 1446

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/81 (19%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
 Frame = +2

Query: 425 IDFSKTEDEFCNVKKEGESSSDTKSDE---DNKDQSYQSSLWPWDSVR--NKLRSALTEV 589
           ++F     +   ++ + +  +D+K D    +N D+     ++P  S +  +K+R    + 
Sbjct: 432 VEFDNKRSKTVIIESDDDMQTDSKPDSAPSENADEIIDLDIFPSQSPKLGDKVRPKPFKC 491

Query: 590 SVLADVLNIAKEKRYMVLDPV 652
           ++  ++LN+ +  R+ VLD +
Sbjct: 492 TICTEMLNVPEVHRHPVLDVI 512


>03_01_0222 -
           1756769-1756801,1756889-1756917,1756975-1757859,
           1758244-1759273,1759354-1759401,1759626-1760480
          Length = 959

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +2

Query: 404 LARLAQKIDFSKTEDEFCNVKKEGE-SSSDTKSDEDNK--DQSYQS 532
           L    QK+++S   +  CN  KE +  SSD  SD  +K  D SY++
Sbjct: 264 LVMTTQKVNYSAEIENICNALKEVDLRSSDVSSDPRSKVVDASYRA 309


>02_05_1167 - 34638709-34639104,34640653-34642158
          Length = 633

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/77 (22%), Positives = 33/77 (42%)
 Frame = +2

Query: 428 DFSKTEDEFCNVKKEGESSSDTKSDEDNKDQSYQSSLWPWDSVRNKLRSALTEVSVLADV 607
           D  K +++  + KK+G SS D+   E    +  +  LW       K    +  + VLA+ 
Sbjct: 420 DLGKGKEKNSSKKKKGASSGDSTKHESEYKKGLRPVLWLTPDFPLKTDELIPLLDVLANK 479

Query: 608 LNIAKEKRYMVLDPVQP 658
           +   +  R ++   + P
Sbjct: 480 VKAVRRLRELLTTKLPP 496


>12_02_0998 +
           25126114-25126596,25129213-25129339,25129349-25129459,
           25130122-25130270,25130356-25130643,25130753-25130941,
           25131445-25131619,25132219-25132316
          Length = 539

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = +2

Query: 395 SENLARLAQKIDFSKTEDEFCNVKKEGESSSDTKSDEDNKDQSYQSSLWPWD 550
           +E+++ +A  +D  +      +V ++ +   +   DE+ KD SY+ S  P++
Sbjct: 9   AEDMSGIASNLDNEEQAIPLSDVPEQYKEDPENTYDEETKDSSYEESGIPYN 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,236,317
Number of Sequences: 37544
Number of extensions: 332813
Number of successful extensions: 1001
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)