Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_N09
(897 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110477-20|CAB76740.3| 728|Caenorhabditis elegans Hypothetical... 60 3e-09
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z93389-5|CAI79177.1| 212|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81048-4|CAB02844.1| 219|Caenorhabditis elegans Hypothetical pr... 29 3.4
AL132948-35|CAC51060.2| 887|Caenorhabditis elegans Hypothetical... 29 3.4
U41624-2|AAF99943.2| 351|Caenorhabditis elegans C.elegans homeo... 29 4.5
AF244368-1|AAF77181.1| 351|Caenorhabditis elegans LIM homeobox ... 29 4.5
Z81051-8|CAB02869.1| 425|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z81037-4|CAB02747.2| 391|Caenorhabditis elegans Hypothetical pr... 29 6.0
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 29 6.0
AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical ... 29 6.0
AC024838-6|AAF60823.1| 214|Caenorhabditis elegans Hypothetical ... 29 6.0
>AL110477-20|CAB76740.3| 728|Caenorhabditis elegans Hypothetical
protein Y113G7B.18 protein.
Length = 728
Score = 59.7 bits (138), Expect = 3e-09
Identities = 36/125 (28%), Positives = 69/125 (55%), Gaps = 9/125 (7%)
Frame = +2
Query: 305 VNISIEAPIENQIQEITYDGQEIYQAPLSMSENLARLAQKIDFSK---TEDEFCNVKKEG 475
V++ +E+ + +IQEI +DG E Y P + ++++ +LA+K++++K T+ + N K +
Sbjct: 27 VDLVLESNDDWKIQEIGFDGVERYLQPETFTDHVGKLARKVEWTKLVGTKSPYENSKVDP 86
Query: 476 ESSSDTKSDEDN--KDQSYQSSLWPWDSVRNKLRSALTEVSVLADVLNIAKEKRYM---- 637
E D ++ ++ PW SV L +L +++ L DV+++ K YM
Sbjct: 87 EDELDDENVAKGGLNEELVTPEAGPWSSVAKYLHESLNQLNSLLDVISVTKSTDYMKALT 146
Query: 638 VLDPV 652
VLDP+
Sbjct: 147 VLDPI 151
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
ZK1067.2 protein.
Length = 2219
Score = 32.3 bits (70), Expect = 0.48
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 338 QIQEITYDGQEIYQAPLSMSENLARLAQKIDFSK-TEDEFCNVKKEGESSSDTKSDEDNK 514
+IQ+ TYD + PLS E + + DF K T+ + KK + S+++NK
Sbjct: 979 EIQQFTYDHVDTKGIPLSPDEAIGCWLLERDFGKATKSQTKKAKKPKFQGAQLDSEDENK 1038
Query: 515 D 517
D
Sbjct: 1039 D 1039
>Z93389-5|CAI79177.1| 212|Caenorhabditis elegans Hypothetical
protein T13F3.8 protein.
Length = 212
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = +2
Query: 299 NSVNISIEAPIENQ----IQEITYDGQEIYQAPLSMSENLARLAQKIDFSKTEDEFCNVK 466
N+VNI AP E + +++ + +E + E + +K K E+E
Sbjct: 56 NNVNIGNPAPEEKKKEEKVEKKPEENKEAEKKDEPKKEEEKKEEEKKKEEKKEEEKKEEV 115
Query: 467 KEGESSSDTKSDEDNKD 517
KE E D+K DE KD
Sbjct: 116 KEEEKKDDSKRDEKKKD 132
>Z81048-4|CAB02844.1| 219|Caenorhabditis elegans Hypothetical
protein C41G7.6 protein.
Length = 219
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 416 AQKIDFSKTEDEFCNVKKEGESSSDTKSDEDNKDQ 520
A D K + + + KKEG+ + K DED KD+
Sbjct: 63 AAPADGEKKDGDKKSEKKEGDEKKEEKKDEDKKDE 97
>AL132948-35|CAC51060.2| 887|Caenorhabditis elegans Hypothetical
protein Y39B6A.47 protein.
Length = 887
Score = 29.5 bits (63), Expect = 3.4
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = +2
Query: 365 QEIYQAPLSMSENLARLAQKIDFS----KTEDEFCNVKK-EGESSSDTKSDEDNKDQSYQ 529
QE AP + + ++ KIDF+ K ++ F K+ GE S SDE + D Y
Sbjct: 99 QENEPAPATSKSHADKITVKIDFTELTEKLKEMFETQKRSSGELSGSLDSDESSTDSVYL 158
Query: 530 SSLWPWDSVRNKLRSALTEVSVLADVLNI 616
+ L N+ ++ + + D++N+
Sbjct: 159 NDLQNLTKALNEFQAPIKDKK---DIVNL 184
>U41624-2|AAF99943.2| 351|Caenorhabditis elegans C.elegans homeobox
protein 14 protein.
Length = 351
Score = 29.1 bits (62), Expect = 4.5
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Frame = +2
Query: 407 ARLAQKIDFSKTEDEFCNVKKEGESSS-------DTKSDEDNKDQSYQSSLWPWDSVRNK 565
ARL K D+ + D+ CN + EG+ S+ KS E K Q+YQ+S P VR +
Sbjct: 155 ARLVCKDDYEQARDKHCN-ELEGDGSNKRPRTTISAKSLETLK-QAYQTSSKPARHVREQ 212
Query: 566 LRS 574
L S
Sbjct: 213 LAS 215
>AF244368-1|AAF77181.1| 351|Caenorhabditis elegans LIM homeobox
protein CEH-14 protein.
Length = 351
Score = 29.1 bits (62), Expect = 4.5
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Frame = +2
Query: 407 ARLAQKIDFSKTEDEFCNVKKEGESSS-------DTKSDEDNKDQSYQSSLWPWDSVRNK 565
ARL K D+ + D+ CN + EG+ S+ KS E K Q+YQ+S P VR +
Sbjct: 155 ARLVCKDDYEQARDKHCN-ELEGDGSNKRPRTTISAKSLETLK-QAYQTSSKPARHVREQ 212
Query: 566 LRS 574
L S
Sbjct: 213 LAS 215
>Z81051-8|CAB02869.1| 425|Caenorhabditis elegans Hypothetical
protein C55A6.9 protein.
Length = 425
Score = 28.7 bits (61), Expect = 6.0
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Frame = +2
Query: 263 CTVYLFFKSKMANS----VNISIEAPIENQIQEITYDGQEIYQAPLSMSENLARLAQK-- 424
C V + K KMA S + ++ P E + +++ E+Y+ P + + + Q+
Sbjct: 318 CNVKMTRKPKMALSRKSKLTLTYRNPSELEQKDMNKREAELYEQPKTRKQEILEKIQEKK 377
Query: 425 ------IDFSKTEDEFCNVKKEGESSSDTKSDEDN 511
D S D+ K +SSSD SD+D+
Sbjct: 378 EEGGDSSDQSSDSDDDKPQKSRSDSSSDVSSDDDS 412
>Z81037-4|CAB02747.2| 391|Caenorhabditis elegans Hypothetical
protein C17E4.6 protein.
Length = 391
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 437 KTEDEFCNVKKEGESSSDTKSDED 508
++EDE N E E + DT SDED
Sbjct: 61 ESEDETSNASDEQEENDDTSSDED 84
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 28.7 bits (61), Expect = 6.0
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Frame = +2
Query: 272 YLFFKSKMANSVNI--SIEAPIENQIQEITYDGQEI-YQAPLSMSENLARLAQKIDFSKT 442
Y FFK + N S+E ++Q ++ + I ++ P+ + E LA + + +
Sbjct: 1378 YGFFKYDRESRYNEEQSLEMKNRRELQRAIFEKRIITFRQPV-IEETEQELAIEENLNVE 1436
Query: 443 EDEFCNVKKEGESSSDTKSDEDNKDQS 523
ED+ +E E + K+D D D S
Sbjct: 1437 EDDLRTTSEESEGEDEVKNDSDPNDIS 1463
>AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical
protein E03H12.5 protein.
Length = 210
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 422 KIDFSKTEDEFCNVKKEGESSSDTKSDEDNKD 517
K + K ED+ + KKE + D K D+D KD
Sbjct: 174 KKEDDKKEDDKKDDKKEDDKKDDEKKDDDKKD 205
>AC024838-6|AAF60823.1| 214|Caenorhabditis elegans Hypothetical
protein Y59E9AL.6 protein.
Length = 214
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 392 MSENLARLAQKIDFSKTEDEFCNVKKEGESSSDTKSDEDNKDQ 520
M E + +K + + +++ KK+G+ D K D+D KD+
Sbjct: 80 MKEGEEKKNEKKEGDEKDEKKDEEKKDGDDKKDEKKDDDKKDE 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,058,592
Number of Sequences: 27780
Number of extensions: 298884
Number of successful extensions: 1087
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -