Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_N08
(946 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0080 + 587674-588510 33 0.44
01_01_0083 + 631196-631675 33 0.44
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 32 0.58
02_05_0686 - 30900748-30902167,30903442-30904742 32 0.58
07_03_1136 + 24218601-24218734,24218769-24219906 32 0.76
01_01_0082 + 625198-625719 31 1.8
07_01_0479 + 3606663-3607448 29 5.4
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 29 5.4
12_02_0299 - 17051570-17052474,17053542-17053755 29 7.1
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 9.4
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 28 9.4
03_05_0067 - 20460206-20460703,20461255-20461530 28 9.4
>07_01_0080 + 587674-588510
Length = 278
Score = 32.7 bits (71), Expect = 0.44
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +2
Query: 437 PXXGGXGNFFXXXKXPPPPGXGGXXFGAPXPXPPXKP 547
P GG G F PPPP G P P PP P
Sbjct: 80 PRLGGDGMFRRPPPPPPPPPSSGSPPPPPPPPPPPPP 116
Score = 28.3 bits (60), Expect = 9.4
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 704 GFFXXGPPPPXXXLQKNSPPPXXGGGXPP 790
G F PPPP SPPP PP
Sbjct: 86 GMFRRPPPPPPPPPSSGSPPPPPPPPPPP 114
>01_01_0083 + 631196-631675
Length = 159
Score = 32.7 bits (71), Expect = 0.44
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2
Query: 431 FXPXXGGXGNFFXXXKXPPPPGXGGXXFGAPXPXPP 538
+ P GG G + + P G GG F P P PP
Sbjct: 77 YPPPQGGGGGYIPYYQPPAGGGGGGGGFNYPAPPPP 112
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 32.3 bits (70), Expect = 0.58
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = +1
Query: 691 PPFXGFFXXGXPPPRXXTXKKFPPPXXGGGXXPXGEL-KXXXGVXPRXTPPGXPPVXXP 864
PP G PPP PPP GG P + GV TPPG P P
Sbjct: 1152 PPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMP 1210
Score = 31.9 bits (69), Expect = 0.76
Identities = 34/133 (25%), Positives = 35/133 (26%)
Frame = +1
Query: 481 PPPPXGXGXXFWGPXPXPPXKTXXXXXXXXXXXXXXXXXXXXVSPKXRGNPXKKIXXXXG 660
PPP G G P P PP P G G
Sbjct: 1100 PPPSIGAG----APPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVG 1155
Query: 661 AXKGPKPXKXPPFXGFFXXGXPPPRXXTXKKFPPPXXGGGXXPXGELKXXXGVXPRXTPP 840
GP P PP F G PPP PPP G G G PP
Sbjct: 1156 GLGGP-PAPPPPAG--FRGGTPPPNAHGGVAPPPPPPRGHGGVGGP-PTPPGAPAPPMPP 1211
Query: 841 GXPPVXXPXXXGK 879
G P P G+
Sbjct: 1212 GVPGGPPPPPGGR 1224
Score = 31.5 bits (68), Expect = 1.0
Identities = 18/58 (31%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Frame = +1
Query: 673 PKPXKXPPFXGFFXXGXPPPRXXTXKKFPPPXXGG--GXXPXGELKXXXGVXPRXTPP 840
P P PP G + PPP PPP GG G P + G PP
Sbjct: 1083 PLPPPLPPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPP 1140
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.3 bits (70), Expect = 0.58
Identities = 26/89 (29%), Positives = 28/89 (31%)
Frame = +1
Query: 613 PKXRGNPXKKIXXXXGAXKGPKPXKXPPFXGFFXXGXPPPRXXTXKKFPPPXXGGGXXPX 792
P R +P + A P P PP PPP K PPP G P
Sbjct: 291 PPGRESPSRPQSIAAAAVASPAPPPPPPPKPAAAAPPPPP---PPKAAPPPPPPKGPPPP 347
Query: 793 GELKXXXGVXPRXTPPGXPPVXXPXXXGK 879
K G P P G P P GK
Sbjct: 348 PPAK---GPPPPPPPKGPSPPPPPPPGGK 373
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 31.9 bits (69), Expect = 0.76
Identities = 26/103 (25%), Positives = 28/103 (27%)
Frame = -2
Query: 789 GGXPPPXXGGGEFFXSXXXGGGGPXXKKPXKRXXXXXXXXXXXPLGXXNFFXGVXPXFGG 610
GG PP GGG S G GG +P LG + GG
Sbjct: 104 GGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGG 163
Query: 609 NXXXXXXXXXXXXXXXXXGAXGFXGGXGXGAPKXXPPXPGGGG 481
GG G G P P GGGG
Sbjct: 164 GRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGG 206
>01_01_0082 + 625198-625719
Length = 173
Score = 30.7 bits (66), Expect = 1.8
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Frame = +1
Query: 724 PPPRXXTXKKFPPPXXGGGXXPXGELKXXXGVXPR----XTPPGXPPVXXP 864
PPP + PPP GGG P G P TPP P P
Sbjct: 84 PPPTTPSTNCPPPPYGGGGYNPTPSYNPTPGYNPTPSGWFTPPNMPSYLTP 134
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.1 bits (62), Expect = 5.4
Identities = 19/68 (27%), Positives = 22/68 (32%)
Frame = +1
Query: 673 PKPXKXPPFXGFFXXGXPPPRXXTXKKFPPPXXGGGXXPXGELKXXXGVXPRXTPPGXPP 852
P P + PP G PPP + PPP P G+ P PP P
Sbjct: 184 PIPFQRPPGVPPAFPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPPFRP 243
Query: 853 VXXPXXXG 876
P G
Sbjct: 244 GMPPPPPG 251
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 29.1 bits (62), Expect = 5.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 722 PPPPXXXLQKNSPPPXXGGGXPP 790
PPPP N PPP G PP
Sbjct: 446 PPPPPGSSMYNPPPPAPGQATPP 468
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 28.7 bits (61), Expect = 7.1
Identities = 18/66 (27%), Positives = 19/66 (28%)
Frame = +3
Query: 705 VFXPXXPPPPXXXXKKIXXXXXXXXXXXXXXIKXXPGGXPPXNPPRXPPCXXPRXXXEKX 884
+F P PPPP P PP PP PP P
Sbjct: 283 IFSPPSPPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPPPPPPPSFP-WPFPPL 341
Query: 885 XPLFSP 902
PLF P
Sbjct: 342 APLFPP 347
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 9.4
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +2
Query: 482 PPPPGXG-GXXFGAPXPXPP 538
PPPP G G F AP P PP
Sbjct: 651 PPPPAPGIGNKFPAPPPPPP 670
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.3 bits (60), Expect = 9.4
Identities = 21/70 (30%), Positives = 21/70 (30%), Gaps = 2/70 (2%)
Frame = +1
Query: 661 AXKGPKPXKXPPFXGFFXXGXPPPRXXTXKKFP-PPXXGGGXXPX-GELKXXXGVXPRXT 834
A P P P G PPP P PP G G P G G P
Sbjct: 329 AAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPA 388
Query: 835 PPGXPPVXXP 864
PG P P
Sbjct: 389 LPGGPRARGP 398
>03_05_0067 - 20460206-20460703,20461255-20461530
Length = 257
Score = 28.3 bits (60), Expect = 9.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 707 FFXXGPPPPXXXLQKNSPPPXXGGGXPP 790
+F GPPPP + + PP G PP
Sbjct: 20 YFQAGPPPPPPQYFQGAHPPAAMWGQPP 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,621,352
Number of Sequences: 37544
Number of extensions: 552875
Number of successful extensions: 2167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1866
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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