Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_N08
(946 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 33 0.39
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.91
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 0.91
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 0.91
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 0.91
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 0.91
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 2.1
U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical pr... 30 2.8
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 3.7
L23648-9|AAK95877.1| 466|Caenorhabditis elegans Prion-like-(q/n... 29 3.7
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 29 6.4
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 6.4
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 29 6.4
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 29 6.4
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 29 6.4
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 32.7 bits (71), Expect = 0.39
Identities = 22/69 (31%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Frame = +1
Query: 610 SPKXRGNPXKKIXXXXGAXKGPKPXKXPPFXGFFXXGXPP------PRXXTXKKFPPPXX 771
SP+ RG P + G G + PP G G PP PR PPP
Sbjct: 1548 SPQNRGPPMGGLPPPHGGMNGWRGGPPPPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPPN 1607
Query: 772 GGGXXPXGE 798
GG P E
Sbjct: 1608 GGPPPPSVE 1616
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 719 GPPPPXXXLQKNSPPPXXGGGXPP 790
G PPP + PPP GG PP
Sbjct: 1590 GGPPPRLGMPPPGPPPPNGGPPPP 1613
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 719 GPPPPXXXLQKNSPPPXXGGGXP 787
GPPPP PPP GG P
Sbjct: 1572 GPPPPRGGSHCQGPPPLMGGPPP 1594
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.5 bits (68), Expect = 0.91
Identities = 21/69 (30%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Frame = +1
Query: 673 PKPXKXPPFXGFFXXGXPPPRXXTXKKFPPPXXGGGXXPXGELKXXXGVXP-RXTPPGXP 849
P P PP G PPP PPP G P G P R PPG
Sbjct: 272 PMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMG 331
Query: 850 PVXXPXXXG 876
+ P G
Sbjct: 332 GMPPPPPPG 340
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = -3
Query: 377 PKXXXXPPFXPKXXFFPPXXGGGGPXXXXXFXXXGXXXPPPKGGXPXPG 231
P PP P F PP GG P G PPP P G
Sbjct: 311 PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 359
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.5 bits (68), Expect = 0.91
Identities = 28/97 (28%), Positives = 29/97 (29%)
Frame = +2
Query: 248 PLWGGGXGXPXXKKXXGXGXPPPXXGGEKXXFLGKXGGPXXFXXPXXXGKXXXXXXXXXF 427
P+ GG P G PPP GG G P P G
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP----- 762
Query: 428 FFXPXXGGXGNFFXXXKXPPPPGXGGXXFGAPXPXPP 538
P GG PPPP GG G P P PP
Sbjct: 763 ---PPPGGC------PPPPPPPPPGGFKGGPPPPPPP 790
Score = 28.7 bits (61), Expect = 6.4
Identities = 25/72 (34%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Frame = +1
Query: 673 PKPXKXPPFXGFFXXGXPPPRXXTXKKFPPPXXGG--GXXPXGELKXXXGVXPRXTPP-- 840
P P PP G G PPP PP GG P G L G P PP
Sbjct: 714 PPPPGLPPITG----GPPPPPPPGGL---PPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 841 GXPPVXXPXXXG 876
G PP P G
Sbjct: 767 GCPPPPPPPPPG 778
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 436 PXXGGGXXFFXXXKXPPPPXGXGXXFWGPXPXPP 537
P GG PPPP G GP P PP
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 763
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.5 bits (68), Expect = 0.91
Identities = 28/97 (28%), Positives = 29/97 (29%)
Frame = +2
Query: 248 PLWGGGXGXPXXKKXXGXGXPPPXXGGEKXXFLGKXGGPXXFXXPXXXGKXXXXXXXXXF 427
P+ GG P G PPP GG G P P G
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP----- 762
Query: 428 FFXPXXGGXGNFFXXXKXPPPPGXGGXXFGAPXPXPP 538
P GG PPPP GG G P P PP
Sbjct: 763 ---PPPGGC------PPPPPPPPPGGFKGGPPPPPPP 790
Score = 28.7 bits (61), Expect = 6.4
Identities = 25/72 (34%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Frame = +1
Query: 673 PKPXKXPPFXGFFXXGXPPPRXXTXKKFPPPXXGG--GXXPXGELKXXXGVXPRXTPP-- 840
P P PP G G PPP PP GG P G L G P PP
Sbjct: 714 PPPPGLPPITG----GPPPPPPPGGL---PPITGGPPPPPPPGGLPPISGGPPPPPPPPG 766
Query: 841 GXPPVXXPXXXG 876
G PP P G
Sbjct: 767 GCPPPPPPPPPG 778
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 436 PXXGGGXXFFXXXKXPPPPXGXGXXFWGPXPXPP 537
P GG PPPP G GP P PP
Sbjct: 730 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 763
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.5 bits (68), Expect = 0.91
Identities = 21/69 (30%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Frame = +1
Query: 673 PKPXKXPPFXGFFXXGXPPPRXXTXKKFPPPXXGGGXXPXGELKXXXGVXP-RXTPPGXP 849
P P PP G PPP PPP G P G P R PPG
Sbjct: 282 PMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMG 341
Query: 850 PVXXPXXXG 876
+ P G
Sbjct: 342 GMPPPPPPG 350
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = -3
Query: 377 PKXXXXPPFXPKXXFFPPXXGGGGPXXXXXFXXXGXXXPPPKGGXPXPG 231
P PP P F PP GG P G PPP P G
Sbjct: 321 PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 369
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.5 bits (68), Expect = 0.91
Identities = 28/97 (28%), Positives = 29/97 (29%)
Frame = +2
Query: 248 PLWGGGXGXPXXKKXXGXGXPPPXXGGEKXXFLGKXGGPXXFXXPXXXGKXXXXXXXXXF 427
P+ GG P G PPP GG G P P G
Sbjct: 291 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP----- 345
Query: 428 FFXPXXGGXGNFFXXXKXPPPPGXGGXXFGAPXPXPP 538
P GG PPPP GG G P P PP
Sbjct: 346 ---PPPGGC------PPPPPPPPPGGFKGGPPPPPPP 373
Score = 28.7 bits (61), Expect = 6.4
Identities = 25/72 (34%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Frame = +1
Query: 673 PKPXKXPPFXGFFXXGXPPPRXXTXKKFPPPXXGG--GXXPXGELKXXXGVXPRXTPP-- 840
P P PP G G PPP PP GG P G L G P PP
Sbjct: 297 PPPPGLPPITG----GPPPPPPPGGL---PPITGGPPPPPPPGGLPPISGGPPPPPPPPG 349
Query: 841 GXPPVXXPXXXG 876
G PP P G
Sbjct: 350 GCPPPPPPPPPG 361
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 436 PXXGGGXXFFXXXKXPPPPXGXGXXFWGPXPXPP 537
P GG PPPP G GP P PP
Sbjct: 313 PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 346
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 30.3 bits (65), Expect = 2.1
Identities = 26/94 (27%), Positives = 27/94 (28%), Gaps = 2/94 (2%)
Frame = +2
Query: 263 GXGXPXXKKXXGXGXPPPXXG--GEKXXFLGKXGGPXXFXXPXXXGKXXXXXXXXXFFFX 436
G P G PPP G G G P P G +
Sbjct: 365 GGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYG 424
Query: 437 PXXGGXGNFFXXXKXPPPPGXGGXXFGAPXPXPP 538
P GG G F PPPPG G P PP
Sbjct: 425 PPQGGPGGF-----GPPPPGGPGAYGPPPTGFPP 453
>U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical
protein C27H5.3 protein.
Length = 448
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 901 GEKRGXXFSXXXRGXXQGGXRGGFXGGXPPG 809
G G F RG +GG RGGF GG G
Sbjct: 337 GRGGGGGFRGGDRGGFRGGDRGGFRGGDRGG 367
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -1
Query: 901 GEKRGXXFSXXXRGXXQGGXRGGFXGGXPPG 809
G RG F RG +GG RGGF GG G
Sbjct: 346 GGDRGG-FRGGDRGGFRGGDRGGFRGGDRGG 375
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = -3
Query: 359 PPFXPKXXFFPPXXGGGGPXXXXXFXXXGXXXPPP-KGGXPXP 234
PP P F PP G GG G PPP GG P P
Sbjct: 66 PPPVPNG-FIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPP 107
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/59 (32%), Positives = 20/59 (33%)
Frame = +1
Query: 673 PKPXKXPPFXGFFXXGXPPPRXXTXKKFPPPXXGGGXXPXGELKXXXGVXPRXTPPGXP 849
P P PP F G PPP PPP G P GV P+ P P
Sbjct: 78 PGPGGIPPPPPMFAGGIPPP-PPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQPPRPKTP 135
>L23648-9|AAK95877.1| 466|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 38
protein.
Length = 466
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/54 (25%), Positives = 19/54 (35%)
Frame = +1
Query: 628 NPXKKIXXXXGAXKGPKPXKXPPFXGFFXXGXPPPRXXTXKKFPPPXXGGGXXP 789
NP + G P P P+ + G P P ++P P GG P
Sbjct: 2 NPNQPPNYPPGNPNQPPPFPPTPYYPMYQAGMPMPYIPQSPQYPQPGPPGGPPP 55
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/43 (41%), Positives = 18/43 (41%)
Frame = +2
Query: 236 GXGXPLWGGGXGXPXXKKXXGXGXPPPXXGGEKXXFLGKXGGP 364
G G P GG G P G G PPP GG G GGP
Sbjct: 179 GMGGPPGHGGQGGPPGH--GGMGGPPPGQGGPGGP--GGPGGP 217
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/43 (41%), Positives = 18/43 (41%)
Frame = +2
Query: 236 GXGXPLWGGGXGXPXXKKXXGXGXPPPXXGGEKXXFLGKXGGP 364
G G P GG G P G G PPP GG G GGP
Sbjct: 459 GMGGPPGHGGQGGPPGH--GGMGGPPPGQGGPGGP--GGPGGP 497
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 482 PPPPGXGGXXFGAPXPXPPXKPXA 553
PPPP GAP P PP P A
Sbjct: 234 PPPPPLPPVGAGAPPPPPPPPPPA 257
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 482 PPPPGXGGXXFGAPXPXPPXKPXA 553
PPPP GAP P PP P A
Sbjct: 220 PPPPPLPPVGAGAPPPPPPPPPPA 243
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 482 PPPPGXGGXXFGAPXPXPPXKPXA 553
PPPP GAP P PP P A
Sbjct: 220 PPPPPLPPVGAGAPPPPPPPPPPA 243
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,074,396
Number of Sequences: 27780
Number of extensions: 348110
Number of successful extensions: 1502
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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