Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_N04
(929 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0980 + 21406822-21409496,21410322-21410376 33 0.32
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 32 0.75
09_06_0111 - 20924838-20924969,20925147-20925290,20925391-209254... 30 2.3
11_06_0092 + 19973364-19975983,19976272-19976648 29 7.0
12_01_0552 + 4469009-4469080,4470052-4470117,4470808-4470941,447... 28 9.2
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 28 9.2
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 28 9.2
05_07_0114 - 27769593-27770267 28 9.2
01_01_0533 + 3917101-3917603,3918312-3919305 28 9.2
>04_03_0980 + 21406822-21409496,21410322-21410376
Length = 909
Score = 33.1 bits (72), Expect = 0.32
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 446 LPPLCSEGPSCRAVSTQNGFLSLRSWPGTRPPHRPSLFPAPI 321
LP + ++GP AV + W G H PSLF AP+
Sbjct: 836 LPAVAADGPK-PAVEIEKDVWDALEWDGVEADHHPSLFQAPV 876
>04_04_1105 -
30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 31.9 bits (69), Expect = 0.75
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 617 GPCLTIAYGVEQCARVSAPARQVAHPARKRHTIEQSLTTCFAPIPL 480
G L++ G+ +CA A +PAR R+ I S T P+P+
Sbjct: 90 GELLSVPVGLSRCACPLCGAELAVYPARLRNYILSSAATAAVPVPV 135
>09_06_0111 -
20924838-20924969,20925147-20925290,20925391-20925453,
20925993-20926116,20926779-20927005,20927088-20927255,
20927348-20927498,20927567-20927889
Length = 443
Score = 30.3 bits (65), Expect = 2.3
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Frame = -1
Query: 626 AAXGPCLTIAYGVEQCARVSAPARQVAHPARKRHTIEQSLTTCFAPIPLEGRRTLSS--V 453
AA L A + A VSA A PA S +C P+ RTL S V
Sbjct: 4 AASSSLLAAASSSSRAAAVSARRAPSASPAAAASLPSPSRASCAPPLRASAARTLRSRVV 63
Query: 452 CPLPPLCSEGPSCRAVSTQNGFLSLRSWP 366
P P+ R + + L RS+P
Sbjct: 64 ASAAPAMQPPPASRVSTVVDVDLGDRSYP 92
>11_06_0092 + 19973364-19975983,19976272-19976648
Length = 998
Score = 28.7 bits (61), Expect = 7.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 336 IPSSNLSIDCDICESFASINLSRLLIRGSS 247
I SSN+ +D D+ L+R+LI GSS
Sbjct: 824 IKSSNVLLDADMVAHVGDFGLARILIEGSS 853
>12_01_0552 +
4469009-4469080,4470052-4470117,4470808-4470941,
4471073-4471179,4471695-4471802,4471879-4471949,
4472126-4472185,4472264-4472319,4472663-4472723,
4472809-4473076,4473174-4473355,4473444-4473736,
4474048-4474138
Length = 522
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -3
Query: 354 TAPAFSIPSSNLSIDCDICESFASINLSRLLI 259
+AP S P + L++DC++C + A L+R+ +
Sbjct: 169 SAPPGSSPYAILALDCEMCVTAAGFELTRVTL 200
>10_08_0959 -
21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 131 SRALVDEVVDVLKLGKEIGEEIIASWNVV 217
SR +VD+ D+ KL +E+ E+I W ++
Sbjct: 477 SRLVVDDNEDIKKLDRELDIEVILQWRML 505
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 516 AKPNNVLRSNSS*RPTYTLICLSTAATLFRRTVMSCSF 403
+K N+ S+S R Y +IC+ A +LF+ V S+
Sbjct: 1167 SKIENIEMSSSGKRTEYAIICIELALSLFKEYVTISSY 1204
>05_07_0114 - 27769593-27770267
Length = 224
Score = 28.3 bits (60), Expect = 9.2
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 518 EQSLTTCFAPIPLEGRRTLSSVCPL 444
+Q++ +CF P+P EG R + + P+
Sbjct: 173 DQNVVSCFYPVPSEGTRQVLTALPI 197
>01_01_0533 + 3917101-3917603,3918312-3919305
Length = 498
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 125 HNSRALVDE--VVDVLKLGKEIGEEIIASWNVVGKTLNVS 238
H S V+E VVD LK+G E+G + + W K + V+
Sbjct: 398 HCSEQFVNEKLVVDHLKIGVEVGVKGVTQWGTEQKEVKVT 437
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,469,772
Number of Sequences: 37544
Number of extensions: 475893
Number of successful extensions: 1483
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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