Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_N04
         (929 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    32   0.67 
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    32   0.67 
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a...    29   3.6  
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil...    29   3.6  
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil...    29   3.6  
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.     28   8.3  
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
           protein F48E3.8a protein.
          Length = 2427

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 672 TCT-RPHLPXXTSSTICCXRPLPNNSLWGGTMCACICSSTPG 550
           TCT  P+LP     T  C R  PNN ++ G    C+    PG
Sbjct: 192 TCTCPPNLPVAADGT--CGRSCPNNQVYSGVTGECLPEKQPG 231


>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
           protein F48E3.8b protein.
          Length = 1299

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 672 TCT-RPHLPXXTSSTICCXRPLPNNSLWGGTMCACICSSTPG 550
           TCT  P+LP     T  C R  PNN ++ G    C+    PG
Sbjct: 192 TCTCPPNLPVAADGT--CGRSCPNNQVYSGVTGECLPEKQPG 231


>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform a protein.
          Length = 1136

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
 Frame = -1

Query: 545 HPARKRHTIEQSLTTCFAPIPLEGRRTLSSVCPLPPLCSEGPSCRAVSTQNGFL----SL 378
           H  +  H + +        IP+     LS+V P PPL S  PS   +     +L    + 
Sbjct: 129 HSKKDGHPVYEERCRVSLTIPISSSEDLSAVSPPPPLPSVPPSKERIKRIPSYLKPTPAP 188

Query: 377 RSWPGTRPPHRPSLFPAP 324
           RS   T P  R    P P
Sbjct: 189 RSMSATLPRARLKTPPPP 206


>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
            protein 3, isoform b protein.
          Length = 1361

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 346  RCGGLVPG-QERRERNPF*VETARHDGPSEQSGGSGQTDES 465
            + GG+  G ++R+E+ P  VE +  D PS  S      DES
Sbjct: 1316 KSGGVEGGMRKRKEKRPAEVEMSARDSPSTSSASHSSDDES 1356


>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
            protein 3, isoform a protein.
          Length = 1358

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 346  RCGGLVPG-QERRERNPF*VETARHDGPSEQSGGSGQTDES 465
            + GG+  G ++R+E+ P  VE +  D PS  S      DES
Sbjct: 1313 KSGGVEGGMRKRKEKRPAEVEMSARDSPSTSSASHSSDDES 1353


>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
          Length = 1404

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = -1

Query: 464 LSSVC-PLPPLCSEGPSCRAVSTQNGFLSLRSWPGTRPPHRPSLF---PAPICRSIAIYA 297
           L S+C P  P C + P+ + V++ + FLS+   P   P +   LF       C+S+A   
Sbjct: 496 LRSICAPYRPFCGQCPNLQIVNSDHHFLSI---PRHYPLYLVGLFDLHSGQTCQSMAHTD 552

Query: 296 RVLPVLIFH 270
             LP+   H
Sbjct: 553 ISLPMAFVH 561


>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical
           protein F35H10.10 protein.
          Length = 1404

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = -1

Query: 464 LSSVC-PLPPLCSEGPSCRAVSTQNGFLSLRSWPGTRPPHRPSLF---PAPICRSIAIYA 297
           L S+C P  P C + P+ + V++ + FLS+   P   P +   LF       C+S+A   
Sbjct: 496 LRSICAPYRPFCGQCPNLQIVNSDHHFLSI---PRHYPLYLVGLFDLHSGQTCQSMAHTD 552

Query: 296 RVLPVLIFH 270
             LP+   H
Sbjct: 553 ISLPMAFVH 561


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,060,677
Number of Sequences: 27780
Number of extensions: 367749
Number of successful extensions: 1006
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)