Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_N02
         (993 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.77 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   6.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = -3

Query: 814 PPPPPXKKXXXXXXXXXXXXXXXXXXGGGXPPPPPP 707
           PPPPP                      GG PPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 722 PPPPPPXXXXXXXXXXKKKKKXPPPP 645
           PP PPP            KK+ PPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPP 315



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/59 (25%), Positives = 19/59 (32%)
 Frame = -1

Query: 819 PPPPPPQXKKXXXXXXXXXXXXXXXXXXGGXXPPPPPPXGXXXXXXXXXKKKKXXAPPP 643
           PPPPPP  ++                      PPPPPP            + +   PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSN-----SSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = -3

Query: 817 PPPPPPXKKXXXXXXXXXXXXXXXXXXGGGXPPPPPP 707
           PPPPPP +                   G   PPPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQ-------GRSAPPPPPP 366


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.0 bits (47), Expect(2) = 6.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 723 PPPPPPXG 700
           PPPPPP G
Sbjct: 24  PPPPPPPG 31



 Score = 21.4 bits (43), Expect(2) = 6.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 834 EXXXXPPPPPP 802
           E    PPPPPP
Sbjct: 19  EPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,934,629
Number of Sequences: 5004
Number of extensions: 32259
Number of successful extensions: 363
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 513276802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)