Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_M24
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.087
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.7  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     22   9.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.087
 Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
 Frame = -2

Query: 446 PPPPPXXXXXXPPPXXXXXXPXXXXXXXXGGGGXXPPPXXG----GXPPPP 306
           PPPPP      P P      P         GG   PPP  G    G PPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIM----GGPPPPPPPPGVAGAGPPPPP 779



 Score = 29.1 bits (62), Expect = 0.81
 Identities = 14/46 (30%), Positives = 14/46 (30%)
 Frame = -3

Query: 442 PPPPXGXXXXPPPXXXXXXXXXXXXFXXGGGXXXPPPXXGGXPPPP 305
           PPPP      P P               G     PPP   G  PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = -2

Query: 446 PPPPPXXXXXXPPPXXXXXXPXXXXXXXXGGGGXXPPPXXGGXPPPP 306
           P P P      PP       P         G G  PPP     PPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP-----PPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/52 (30%), Positives = 16/52 (30%), Gaps = 5/52 (9%)
 Frame = -2

Query: 446 PPPPPXXXXXXPPP----XXXXXXPXXXXXXXXGGGGXXP-PPXXGGXPPPP 306
           PPPPP       PP          P           G  P PP     PPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 21.8 bits (44), Expect(2) = 9.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 496 KXKKKKXXXXFXXXGGGGGGGG 561
           K K  K         GGGGGGG
Sbjct: 32  KAKLAKLKRELITPTGGGGGGG 53



 Score = 21.8 bits (44), Expect(2) = 9.9
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 538 GGGGGGGGG 564
           GGGGGGG G
Sbjct: 47  GGGGGGGLG 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,776,563
Number of Sequences: 5004
Number of extensions: 24263
Number of successful extensions: 192
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)