Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_M23
         (1126 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.51 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.2  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   3.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   4.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.51
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 432 PPPPPXXKXKXXXXXGGGGGGXXXXPPXXPP 524
           PPPPP  + +     G G       PP  PP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +3

Query: 432 PPPPPXXKXKXXXXXGGGGGGXXXXPPXXPP 524
           PPPPP  +        G G      PP  PP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342



 Score = 23.8 bits (49), Expect(2) = 3.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 1028 PPPPPPP 1008
            PPPPPPP
Sbjct: 337  PPPPPPP 343



 Score = 21.8 bits (44), Expect(2) = 3.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 1040 KXXXPPPPPP 1011
            K   PPPPPP
Sbjct: 308  KKRPPPPPPP 317


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 776 GGXXPPPXXXXKKKXXPPPPPP 711
           GG  PPP         PPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPP 780



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 779 GGGXXPPPXXXXKKKXXPPPPPP 711
           GG   PPP         PPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -3

Query: 782 GGGGXXPPPXXXXKKKXXPPPPPP 711
           GG    PPP         PPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 6.3
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 521 GXXGGXXPPXPPPPP 477
           G  G   PP PPPPP
Sbjct: 769 GVAGAGPPPPPPPPP 783



 Score = 25.4 bits (53), Expect(2) = 1.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 1028 PPPPPPPXFXXGXGG 984
            PPPPPPP      GG
Sbjct: 775  PPPPPPPPPAVSAGG 789



 Score = 21.4 bits (43), Expect(2) = 1.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 1049 KKKKXXXPPPPPPP 1008
            ++K     PPPPPP
Sbjct: 724  QQKLLLKSPPPPPP 737


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 512 GGXXPPXPPPPP 477
           GG  PP PPPPP
Sbjct: 303 GGLPPPPPPPPP 314



 Score = 26.2 bits (55), Expect = 8.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 524 GGXXGGXXPPXPPPPP 477
           G    G  PP PPPPP
Sbjct: 298 GDSANGGLPPPPPPPP 313


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 779 GGGXXPPPXXXXKKKXXPPPPPP 711
           G    PPP    +    PPPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 26.2 bits (55), Expect = 8.3
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 764 PPPXXXXKKKXXPPPPPP 711
           PPP         PPPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 1028 PPPPPPPXFXXGXGG 984
            PPPPPPP      GG
Sbjct: 946  PPPPPPPPLVSAAGG 960


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,067
Number of Sequences: 5004
Number of extensions: 36075
Number of successful extensions: 381
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 597654600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)