Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_M22
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    65   1e-11
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    29   0.70 
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    27   3.7  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 42/101 (41%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
 Frame = +1

Query: 181 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKA 360
           F++EP NV+  ++ R++GL + KAVGV  N  R    +     K  +KPAK L R+   A
Sbjct: 30  FNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAK-LFRKDVIA 88

Query: 361 GA-RRSLYK-VKRLLKANHYRTDLCKATLRRASAILRSQRP 477
            A  R  YK +   +    YR DL K ++ RASAIL SQRP
Sbjct: 89  NASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRP 129



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 96  VKMSSSLNWMIIRNNNAFLXEEAQY 170
           + +S+ L W +IR+NN FL +  ++
Sbjct: 1   MSVSNDLIWQVIRDNNRFLVKRPEF 25


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 300 VHYCESLPVRVLHDTNSFLVNQAVVPEGVEVSHIVRLLAERLFD 169
           +HYC S  +  LHDT   LV       G + S +++     + D
Sbjct: 251 IHYCSSSSLSYLHDTERALVGSLTDSYGFKKSGLIKKTISLMID 294


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 30  GILKIWHTL*ARCVW 74
           G+L+IW  +  RCVW
Sbjct: 401 GVLRIWEVMTGRCVW 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,563
Number of Sequences: 5004
Number of extensions: 46792
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)