Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_M22
         (916 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869     67   2e-11
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116     66   4e-11
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650     65   6e-11
05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111...    35   0.10 
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946...    28   9.0  

>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
          Length = 145

 Score = 67.3 bits (157), Expect = 2e-11
 Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
 Frame = +1

Query: 166 NIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATR--KPAKNL 339
           N K  FSKEPNN+ N+HS++++GL +KK V  V+    K   VV    K  +  KPA   
Sbjct: 28  NAKVQFSKEPNNLYNVHSYKHSGLANKKTV-TVQPASGKETAVVLSTTKTEKQNKPASLY 86

Query: 340 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 468
            +   +   R+    VK  +  N+YR DL K  L R SA+ RS
Sbjct: 87  HKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRS 129


>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
          Length = 147

 Score = 66.1 bits (154), Expect = 4e-11
 Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
 Frame = +1

Query: 166 NIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVV-YKKAKATRKPAKNLI 342
           N K  F+KEPNN+ N+HS++++GL +KK V +  +  +    V+   K K    PAK   
Sbjct: 28  NAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDAAVVLSTTKTKKQNAPAKLYH 87

Query: 343 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 468
           +   +   R+    VK  +  N+YR DL K  L R S++ RS
Sbjct: 88  KSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129


>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
          Length = 147

 Score = 65.3 bits (152), Expect = 6e-11
 Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
 Frame = +1

Query: 166 NIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVV-YKKAKATRKPAKNLI 342
           N K  F+KEPNN+ N+HS++++GL +KK V +  +  +    V+   K K    PAK   
Sbjct: 28  NAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDAAVVLSTTKTKKQNAPAKLYH 87

Query: 343 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 468
           +   +   R+    VK  +  N+YR DL K  L R S++ RS
Sbjct: 88  KSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129


>05_05_0075 +
           22209322-22210041,22210323-22210391,22210775-22211145,
           22212291-22212351,22212496-22213086
          Length = 603

 Score = 34.7 bits (76), Expect = 0.10
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 127 SSATTMHSLXKKRNIKKPFSKEPNNVTNLHSFRYNGLI--HKKAVGVVENPDRKG 285
           SS T  HS+   R+I+   S+ P++++   SF YNGL   H  A+     PD  G
Sbjct: 473 SSMTRNHSISASRHIEDGLSQMPHDISGQVSFAYNGLAAHHSIAMAHHHQPDLIG 527


>01_01_1190 +
           9463973-9465732,9466210-9466440,9467664-9467793,
           9468723-9468888,9469528-9469859,9470284-9470513,
           9471535-9471613,9471689-9471865
          Length = 1034

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 428 ARLPFVVLQPSSAPRGPLKQKRLRQPQPSRNN 523
           A  PF  +  +S+PR P   +  RQP P R++
Sbjct: 10  ASAPFPTIPAASSPRNPRAARPRRQPAPFRSS 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,326,269
Number of Sequences: 37544
Number of extensions: 335088
Number of successful extensions: 688
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)