Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_M22
         (916 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457024-1|CAG33305.1|  137|Homo sapiens RPL28 protein.               107   4e-23
BC011582-1|AAH11582.1|  137|Homo sapiens ribosomal protein L28 p...   107   4e-23
BC010182-1|AAH10182.1|  137|Homo sapiens ribosomal protein L28 p...   107   4e-23
BC010173-1|AAH10173.1|  137|Homo sapiens ribosomal protein L28 p...   107   4e-23
U14969-1|AAA85657.1|  137|Homo sapiens ribosomal protein L28 pro...   106   1e-22
AB209627-1|BAD92864.1|   95|Homo sapiens ribosomal protein L28 v...    56   1e-07
AB007179-1|BAA25838.1|   53|Homo sapiens ribosomal protein L28 p...    48   4e-05

>CR457024-1|CAG33305.1|  137|Homo sapiens RPL28 protein.
          Length = 137

 Score =  107 bits (258), Expect = 4e-23
 Identities = 53/107 (49%), Positives = 70/107 (65%)
 Frame = +1

Query: 160 KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNL 339
           KRN K+ +S EPNN+   +SFRYNGLIH+K VGV    D KG  VV K+    RKPA + 
Sbjct: 19  KRN-KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSY 77

Query: 340 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPI 480
           +R      AR +L  ++ +++ N YR DL  A +RRASAILRSQ+P+
Sbjct: 78  VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 124


>BC011582-1|AAH11582.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score =  107 bits (258), Expect = 4e-23
 Identities = 53/107 (49%), Positives = 70/107 (65%)
 Frame = +1

Query: 160 KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNL 339
           KRN K+ +S EPNN+   +SFRYNGLIH+K VGV    D KG  VV K+    RKPA + 
Sbjct: 19  KRN-KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSY 77

Query: 340 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPI 480
           +R      AR +L  ++ +++ N YR DL  A +RRASAILRSQ+P+
Sbjct: 78  VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 124


>BC010182-1|AAH10182.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score =  107 bits (258), Expect = 4e-23
 Identities = 53/107 (49%), Positives = 70/107 (65%)
 Frame = +1

Query: 160 KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNL 339
           KRN K+ +S EPNN+   +SFRYNGLIH+K VGV    D KG  VV K+    RKPA + 
Sbjct: 19  KRN-KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSY 77

Query: 340 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPI 480
           +R      AR +L  ++ +++ N YR DL  A +RRASAILRSQ+P+
Sbjct: 78  VRTTINRNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 124


>BC010173-1|AAH10173.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score =  107 bits (258), Expect = 4e-23
 Identities = 53/107 (49%), Positives = 70/107 (65%)
 Frame = +1

Query: 160 KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNL 339
           KRN K+ +S EPNN+   +SFRYNGLIH+K VGV    D KG  VV K+    RKPA + 
Sbjct: 19  KRN-KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSY 77

Query: 340 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPI 480
           +R      AR +L  ++ +++ N YR DL  A +RRASAILRSQ+P+
Sbjct: 78  VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 124


>U14969-1|AAA85657.1|  137|Homo sapiens ribosomal protein L28
           protein.
          Length = 137

 Score =  106 bits (255), Expect = 1e-22
 Identities = 52/107 (48%), Positives = 70/107 (65%)
 Frame = +1

Query: 160 KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNL 339
           KRN K+ +S EPNN+   +SFRYNGLIH+K VGV    D KG  VV K+    RKPA + 
Sbjct: 19  KRN-KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSY 77

Query: 340 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPI 480
           +R      AR +L  ++ +++ N YR DL  A +RRASAILR+Q+P+
Sbjct: 78  VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRTQKPV 124


>AB209627-1|BAD92864.1|   95|Homo sapiens ribosomal protein L28
           variant protein.
          Length = 95

 Score = 56.4 bits (130), Expect = 1e-07
 Identities = 28/49 (57%), Positives = 34/49 (69%)
 Frame = +1

Query: 160 KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKK 306
           KRN K+ +S EPNN+   +SFRYNGLIH+K VGV    D KG  VV K+
Sbjct: 27  KRN-KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKR 74


>AB007179-1|BAA25838.1|   53|Homo sapiens ribosomal protein L28
           protein.
          Length = 53

 Score = 48.4 bits (110), Expect = 4e-05
 Identities = 21/47 (44%), Positives = 31/47 (65%)
 Frame = +1

Query: 340 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPI 480
           +R      AR +L  ++ +++ N YR DL  A +RRASAILRSQ+P+
Sbjct: 4   VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 50


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,798,915
Number of Sequences: 237096
Number of extensions: 1949844
Number of successful extensions: 18214
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18214
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11881370308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)