Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_M21
(963 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.24
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.32
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.98
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.7
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 27 3.9
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 6.9
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.24
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 590 PPPPXGXXGVXXKXPPXPPP 649
PPPP G G PP PPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783
Score = 30.3 bits (65), Expect = 0.42
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2
Query: 590 PPPPXGXXGVXXKXPPXPPPXXKXPPTXPXAXGA 691
PPPP GV PP PPP PP A G+
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP----PPPAVSAGGS 790
Score = 23.8 bits (49), Expect(2) = 3.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 793 PPPPPPXXKXARGXSFF 843
PPPPPP A G ++
Sbjct: 777 PPPPPPPAVSAGGSRYY 793
Score = 21.4 bits (43), Expect(2) = 3.7
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +1
Query: 763 ETQNPXHXXXPPPPPP 810
E Q PPPPPP
Sbjct: 722 EEQQKLLLKSPPPPPP 737
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.32
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +2
Query: 572 PPQXEXPPPPXGXXGVXXKXPPXPPPXXKXPPTXPXA 682
PP E PP P GV PP PPP P P A
Sbjct: 1192 PPPSEAPPVPKPSVGV----PPVPPPSTAPPVPTPSA 1224
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 572 PPQXEXPPPPXGXXGVXXKXPPXPPPXXKXPP 667
PP PP P G+ PP P P K PP
Sbjct: 1211 PPPSTAPPVPTPSAGL----PPVPVPTAKAPP 1238
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.1 bits (62), Expect = 0.98
Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Frame = -1
Query: 399 GXXGGGPXXAMGGFXXFXXXPSPFXRG-GXFXG--GGFXFXXGG 277
G GGGP GG F P F G G F G GGF GG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267
Score = 27.5 bits (58), Expect = 3.0
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -1
Query: 675 GXVGGXFXWGGGXGGXFXXTPXXPXGGGGXSXWGG 571
G GG F GG GG P P G GG +GG
Sbjct: 184 GHNGGGF---GGFGGGSGGPPPGPGGFGGFGGFGG 215
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -2
Query: 599 GGGVFXXGGGGXXPPPPPXAXRG 531
GGG GGG PPP P G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGG 209
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -3
Query: 676 GAGGGXFXXGGGXGGVFXXNPPXXPGGGG 590
G GGG GGG GG F P GG G
Sbjct: 239 GFGGGPGGFGGGLGG-FGGGPGGFGGGPG 266
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 399 GXXGGGPXXAMGGFXXFXXXPSPFXRGGXFXGG 301
G GGGP GG F P F G GG
Sbjct: 238 GGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 572 PPQXEXPPPPXGXXGVXXKXPPXPPP 649
PP PPPP + PP PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 593 GVFXXGGGGXXPPPPP 546
G F G GG PPPPP
Sbjct: 684 GKFEEGTGGRAPPPPP 699
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 6.9
Identities = 15/52 (28%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Frame = +2
Query: 527 FXPAXRXXXXXXXXXPPQXEXPPPPX--GXXGVXXKXPPXPPPXXKXPPTXP 676
F P PP PP P G + PP PP PP P
Sbjct: 485 FIPGTSAPLPPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMP 536
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,808,044
Number of Sequences: 5004
Number of extensions: 22224
Number of successful extensions: 199
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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