Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_M20
         (1077 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.052
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.37 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.052
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -3

Query: 592 PPXPGXXGGXXXPPPPPXXXGGGXXPP 512
           PP     GG   PPPPP   G G  PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 593 PPPPXGXGGXXXXPPPP 543
           PPPP G  G    PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 592 PPXPGXXGGXXXPPPPP 542
           PP PG  G    PPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPP 781



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = -1

Query: 591 PPXXGXGGXXXXPPPPXXXXGGGGXPPXKXXXPPP 487
           PP     G    PPPP    G G  PP     PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP---PPPPP 783



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 512 GGXPPPPXXXXGGGGXXXXPPXP 580
           G  PPPP     G G    PP P
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPP 782


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
 Frame = +1

Query: 451 GGGGGXPPPXXXGGGXXXFXXGXAXPPXXXXG-GGGXXXXPPXPXGGGGXXXXF 609
           GGG G PPP   G G      G         G GGG       P G GG    F
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,497,268
Number of Sequences: 5004
Number of extensions: 17996
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 565779688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)