Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_M19
         (934 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    30   0.41 
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   2.9  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    27   5.0  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   5.0  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    26   6.6  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    26   6.6  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    26   8.7  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = -2

Query: 546 NLTSTLISLAFISFSLINSDILVHSSTLIRSSILLNCLLHFL 421
           NL   L+   +ISF++  ++ L+ ++  I+ S++  C+L FL
Sbjct: 784 NLRPFLLQEQYISFNMDFAEFLIDTNASIKGSVVNTCVLDFL 825


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 557 YEKILDEAQTKANRTAVITPGC 622
           Y  ILDEAQT  NR  +   GC
Sbjct: 534 YRVILDEAQTIKNRNTLAARGC 555


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 481 STFFDIDKIFHSIELLVTLFAVXGEDVLGKYVL*NLQSKF 362
           S F  +D ++  I +L+T  AV     +  + L NL +KF
Sbjct: 338 SLFTQVDLVYKPIFILITTVAVTASRYMNVFPLSNLLNKF 377


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 401 NIFPXYCKKCNKQFNRMEDLINVEECTSISELIKE--NEIKAKEINVDVK 544
           N+FP + K C ++F     L+    C  +  +  +  + I++ E+N ++K
Sbjct: 771 NVFPRFIKVCFERFPTTMALLRNTVCEKLPSITMQLLSRIESSELNFNLK 820


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -2

Query: 564 FSYNESNLTSTLISLAFISFS---LINSDILVHSSTLIRSSILLNCLLHF 424
           FSY  S + S L  +  IS     L+N  IL  ++ L  S++   CL++F
Sbjct: 139 FSYEVSPVVSVLSGVLLISLPTLILLNLCILKLAAKLHLSALFTTCLIYF 188


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +1

Query: 265  CCGDCRQRHEKFVHGLTYDCPICRGSNYLCNPQTLTEDF 381
            CCGDC   H ++        P+C       N Q + + F
Sbjct: 897  CCGDCLSEHIQYQKRRNIIPPLCHTCRQPFNEQDVYKPF 935


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 582 KLKPIEQQL*PLVVRKKHIVDYESSESDDDN 674
           +++P+  +L   VV KK   DYES  + D+N
Sbjct: 386 EVEPMAPELSSAVVEKKEPEDYESISAVDEN 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,095
Number of Sequences: 5004
Number of extensions: 52440
Number of successful extensions: 194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)