Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_M19
         (934 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0138 + 22644263-22644460,22644617-22644711,22645786-226459...    29   5.3  
04_03_0808 - 19872656-19873165,19873251-19873583,19874443-198745...    29   5.3  

>05_05_0138 +
           22644263-22644460,22644617-22644711,22645786-22645949,
           22646725-22646970,22647600-22647944,22648516-22648586,
           22648676-22648794,22650508-22650637,22650806-22650857,
           22650974-22651136,22651244-22651418,22651772-22651942,
           22652275-22652388,22652559-22652609
          Length = 697

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 15/45 (33%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
 Frame = +2

Query: 446 RMEDLINVEECTSISELIKENEIK-AKEINVDVKFDSLYEKILDE 577
           ++E L+ + E  +  +L +E  ++ AKE+ +D+  +SLY+K +DE
Sbjct: 560 QLESLVRLAEARARVDLREEVTLEDAKEV-IDIMTESLYDKCVDE 603


>04_03_0808 -
           19872656-19873165,19873251-19873583,19874443-19874543,
           19874628-19874853,19874941-19875079,19875339-19875451,
           19875628-19875911,19876287-19876326
          Length = 581

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 11/47 (23%), Positives = 28/47 (59%)
 Frame = -1

Query: 370 SKFVGCRDSWSLCRSGSRKSSRARTFRVSGGSRHSRKQVDRSHSKPS 230
           +++ G   +W     G+R++ R R   ++GG+  ++++ +++ S PS
Sbjct: 49  ARYQGDAAAWPRRLGGARRARRLRELGLAGGASWAKRRHEKASSSPS 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,819,450
Number of Sequences: 37544
Number of extensions: 324616
Number of successful extensions: 934
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)