Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_M18
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0382 - 22501041-22501279,22501717-22501810 31 0.69
02_05_0686 - 30900748-30902167,30903442-30904742 30 1.6
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 2.8
06_03_1310 + 29238644-29240260 29 2.8
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 2.8
11_06_0610 - 25449085-25453284 28 6.4
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692 28 6.4
02_04_0164 + 20484911-20485147,20486639-20487150,20487311-204873... 28 6.4
08_02_1454 - 27222004-27222296,27222389-27222500 28 8.5
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 28 8.5
01_01_0083 + 631196-631675 28 8.5
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 31.5 bits (68), Expect = 0.69
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Frame = +3
Query: 573 PPXGXXFFXPPXKXGGXPPXXKIFFFXXPPPP---XGGGXXKXXXPPP 707
PP ++ PP P ++ PP P GGG K PPP
Sbjct: 56 PPPSPDYYDPPHSPDYYDPPPSPDYYDPPPSPYYGGGGGYGKPPPPPP 103
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = +3
Query: 573 PPXGXXFFXPPXKXGGXPPXXKIFFFXXPPPPXGGGXXKXXXPPP 707
PP G PP G PP PPPP GG PPP
Sbjct: 340 PPKGPP--PPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPP 382
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/70 (27%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Frame = +3
Query: 510 PPXKXKXPPXXXXXXXXVFSXPPXGXXFFX----PPXKXGGXPPXXKIFFFXXPPPPXGG 677
PP + PP PP F PP + PP + PPPP G
Sbjct: 42 PPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGV 101
Query: 678 GXXKXXXPPP 707
+ PPP
Sbjct: 102 NSSQPPPPPP 111
>06_03_1310 + 29238644-29240260
Length = 538
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Frame = +3
Query: 510 PPXKXKXPPXXXXXXXXVFSXPPXGXXFFXPPXKXGGX---PPXXKIFFFXXPPPPXGGG 680
PP PP S PP + PP GG PP + + PPPP G
Sbjct: 459 PPPPTTTPPGHHAPVPGTPSSPPSSS--WSPPQGGGGKLPFPPVHGVAYSSPPPPPSG-- 514
Query: 681 XXKXXXPPPF 710
K PP +
Sbjct: 515 -DKLPFPPVY 523
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Frame = +3
Query: 573 PPXGXXFFXPPXKXGGX--------PPXXKIFFFXXPPPPXGGGXXKXXXPPPFXF 716
PP G PP GG PP + PPPP GG PPP F
Sbjct: 1114 PPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGF 1169
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 615 GGXPPXXKIFFFXXPPPPXGGGXXKXXXPPP 707
G PP I PPPP GG PPP
Sbjct: 1096 GVAPPPPSIGAGAPPPPPPPGGITGVPPPPP 1126
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/53 (28%), Positives = 16/53 (30%)
Frame = +3
Query: 510 PPXKXKXPPXXXXXXXXVFSXPPXGXXFFXPPXKXGGXPPXXKIFFFXXPPPP 668
PP K PP PP PP PP + PPPP
Sbjct: 1147 PPEKSPPPPAPVILPPPPIKSPPPPAPVISPPPPVKSPPPPAPVIL---PPPP 1196
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/53 (28%), Positives = 16/53 (30%)
Frame = +3
Query: 510 PPXKXKXPPXXXXXXXXVFSXPPXGXXFFXPPXKXGGXPPXXKIFFFXXPPPP 668
PP K PP PP PP PP + PPPP
Sbjct: 1179 PPVKSPPPPAPVILPPPPVKSPPPPAPVISPPPPVKSPPPPAPVIL---PPPP 1228
>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
Length = 455
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 679 PPPXGGGGXXKKKIFXXGG 623
PPP GGGG K+F GG
Sbjct: 306 PPPHGGGGSGGGKMFSDGG 324
>02_04_0164 +
20484911-20485147,20486639-20487150,20487311-20487399,
20487586-20487770,20487856-20487894,20488000-20488038
Length = 366
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Frame = -1
Query: 706 GGGXXFFXXPP---PXGGGGXXKKKI-FXXGGXPPXFXGGXKXXXPXGGXEKT 560
GGG F PP GGGG ++ F G P GG K EKT
Sbjct: 13 GGGTDFGWAPPGSGSRGGGGAQSARLGFKPAGRPVRRCGGGKRPLTAATGEKT 65
>08_02_1454 - 27222004-27222296,27222389-27222500
Length = 134
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 354 GGGVKXGFFXRXKKGXTKLNPIGFPQIXPK 265
GGGVK GF+ + KKG PI ++ P+
Sbjct: 3 GGGVK-GFYRQKKKGGVAKKPISRKKLPPQ 31
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 27.9 bits (59), Expect = 8.5
Identities = 21/72 (29%), Positives = 23/72 (31%)
Frame = +3
Query: 492 GGSFXFPPXKXKXPPXXXXXXXXVFSXPPXGXXFFXPPXKXGGXPPXXKIFFFXXPPPPX 671
GG PP + PP P G PP GG P PPPP
Sbjct: 262 GGPPRPPPPQVPPPPPQAPPPPP--PNAPMGMPPRIPPPPVGGTQPPP-------PPPPL 312
Query: 672 GGGXXKXXXPPP 707
G + PPP
Sbjct: 313 ANGPPRSIPPPP 324
>01_01_0083 + 631196-631675
Length = 159
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/44 (27%), Positives = 15/44 (34%)
Frame = +3
Query: 576 PXGXXFFXPPXKXGGXPPXXKIFFFXXPPPPXGGGXXKXXXPPP 707
P + PP P ++ PPP GGG PP
Sbjct: 51 PSSGYSYPPPSSSSSNTPPSSSSYWNYPPPQGGGGGYIPYYQPP 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,778,294
Number of Sequences: 37544
Number of extensions: 258341
Number of successful extensions: 641
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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