Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_M16
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    39   9e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.098
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.098
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   0.27 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.39 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.9  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   6.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 39.1 bits (87), Expect = 9e-04
 Identities = 19/40 (47%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 616 PXP-PPPPPXXGGXPPPPPKXXXGGGGXXXXXXXXXPPPP 732
           P P PPP P  GG PPPPP     G G         PPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAG----PPPPPPPPP 783



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +1

Query: 613 PPXPPPPPPXXGGXPPPPP 669
           PP PPPPP   G  PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
 Frame = +1

Query: 616 PXPPPPPPXXGGX----PPPPPKXXXGGGGXXXXXXXXXPPPP 732
           P PPPPPP   G     PPPPP     GG           P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
 Frame = +1

Query: 613 PPXPPP----PPPXXGGXPPPPPKXXXGGGGXXXXXXXXXPPPP 732
           PP PPP    P P     P PPP    GG           PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGG-------PPPPPPPP 768



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 613 PPXPPPPPP 639
           PP PPPPPP
Sbjct: 775 PPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.098
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = +1

Query: 613 PPXPPPPPPXXGGXPP--PPPKXXXG 684
           P  PPPPPP  G  PP  PPP    G
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 29.5 bits (63), Expect = 0.69
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 5/24 (20%)
 Frame = +1

Query: 613 PPXPPPPPPXXGG-----XPPPPP 669
           PP  PPPPP   G      PPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.3 bits (70), Expect = 0.098
 Identities = 23/82 (28%), Positives = 24/82 (29%), Gaps = 14/82 (17%)
 Frame = +1

Query: 613 PPXPPPP-------PPXXGGX-------PPPPPKXXXGGGGXXXXXXXXXPPPPXXXXXX 750
           PP PPPP       PP   G        PPPPP+    G           PPPP      
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370

Query: 751 XXXXXXXXXXXXGXXXXPPPPP 816
                            PP PP
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPP 392



 Score = 24.6 bits (51), Expect(2) = 0.80
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 616 PXPPPPPPXXGGXPPPPP 669
           P PPP PP   G    PP
Sbjct: 251 PAPPPIPPPSNGTVSSPP 268



 Score = 23.0 bits (47), Expect(2) = 0.80
 Identities = 12/53 (22%), Positives = 12/53 (22%)
 Frame = +1

Query: 655 PPPPPKXXXGGGGXXXXXXXXXPPPPXXXXXXXXXXXXXXXXXXGXXXXPPPP 813
           P PPP                 PPPP                       PPPP
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect(2) = 0.27
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 613 PPXPPPPPP 639
           PP PPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 23.8 bits (49), Expect(2) = 0.96
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 628 PPPPXXGGXPPPPP 669
           PPPP     PP PP
Sbjct: 273 PPPPATPSQPPRPP 286



 Score = 23.4 bits (48), Expect(2) = 0.96
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 616 PXPPPPPP 639
           P PPPPPP
Sbjct: 236 PAPPPPPP 243



 Score = 23.0 bits (47), Expect(2) = 0.27
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 616 PXPPPPPPXXGGXPP 660
           P P PPPP     PP
Sbjct: 234 PLPAPPPPPPPTLPP 248



 Score = 23.0 bits (47), Expect(2) = 7.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 613 PPXPPPPPP 639
           P  PPPPPP
Sbjct: 236 PAPPPPPPP 244



 Score = 21.0 bits (42), Expect(2) = 7.4
 Identities = 10/36 (27%), Positives = 10/36 (27%)
 Frame = +1

Query: 625 PPPPPXXGGXPPPPPKXXXGGGGXXXXXXXXXPPPP 732
           PPPP      P PP        G           PP
Sbjct: 273 PPPPATPSQPPRPPTNASTRSTGTSSSMAHSYDSPP 308


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -3

Query: 674 FXGGGGGXPPXXG--GGGGGXGG 612
           F GG GG PP  G  GG GG GG
Sbjct: 193 FGGGSGGPPPGPGGFGGFGGFGG 215



 Score = 29.1 bits (62), Expect = 0.91
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -3

Query: 668 GGGGGXPPXXGGGGGGXGG 612
           GG GG P   GGG GG GG
Sbjct: 252 GGFGGGPGGFGGGPGGHGG 270



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -3

Query: 668 GGGGGXPPXXGGGGGGXGG 612
           GG GG P   GGG GG GG
Sbjct: 238 GGFGGGPGGFGGGLGGFGG 256



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 668 GGGGGXPPXXGGGGGGXGG 612
           GG  G P   GGG GG GG
Sbjct: 231 GGFEGGPGGFGGGPGGFGG 249


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 613 PPXPPPPPP 639
           PP PPPPPP
Sbjct: 945 PPPPPPPPP 953



 Score = 23.4 bits (48), Expect(2) = 1.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 616 PXPPPPPP 639
           P PPPPPP
Sbjct: 905 PTPPPPPP 912



 Score = 23.0 bits (47), Expect(2) = 1.6
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 622 PPPPPPXXGGXPPPPPKXXXGGGG 693
           P  PPP     PPPPP      GG
Sbjct: 942 PAFPPP-----PPPPPPLVSAAGG 960


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
 Frame = +1

Query: 616  PXPPPPPPXXGGXP--PPPP 669
            P PP  PP   G P  PPPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 613 PPXPPPPPPXXGGXPPPP 666
           PP PPP P      P PP
Sbjct: 5   PPPPPPAPAPAAAAPAPP 22



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 616 PXPPPPPPXXGGXPPPPP 669
           P PPPP P      P PP
Sbjct: 5   PPPPPPAPAPAAAAPAPP 22



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 613 PPXPPPPPPXXGGXPPPPPK 672
           PP P  PPP     PP P K
Sbjct: 144 PPRPSIPPPSPASAPPIPSK 163


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 613 PPXPPPPPP 639
           PP PPPPPP
Sbjct: 306 PPPPPPPPP 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,333
Number of Sequences: 5004
Number of extensions: 29857
Number of successful extensions: 331
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)