Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_M11
         (958 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...   258   1e-69
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    27   5.2  

>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score =  258 bits (631), Expect = 1e-69
 Identities = 123/199 (61%), Positives = 151/199 (75%), Gaps = 5/199 (2%)
 Frame = +2

Query: 134 VDPWTVTGK----SDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGIFFSH 301
           V PW V G      + GIDY++LI +FG++KI  E ++RFEK+ G+K H LLRRG FFSH
Sbjct: 8   VTPWDVKGSIVDGEEKGIDYERLIVQFGTRKITPEQLERFEKLTGKKPHLLLRRGAFFSH 67

Query: 302 RDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVFNVPLIIQLTDDEK 481
           RD ++IL+ +E  K FYLYTGRGPSSDSMHLGHMIPFMF KWLQDVF VPL+IQLTDDEK
Sbjct: 68  RDFDMILDRYEQKKPFYLYTGRGPSSDSMHLGHMIPFMFCKWLQDVFQVPLVIQLTDDEK 127

Query: 482 VLWRD-IKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAFYQNMLRIQKCVT 658
            L++  + +ED ++ A  NAKDIIA+GFDP  TFIF +  ++G   AFYQN++RI KC+T
Sbjct: 128 FLFKQGVSLEDCQRFARENAKDIIAVGFDPKKTFIFMNSTYVG--GAFYQNVVRIAKCIT 185

Query: 659 YNQVKGIFGFGDSDVIGKI 715
            NQ K  FGF DSD IGKI
Sbjct: 186 ANQSKACFGFTDSDSIGKI 204


>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 596 DFIGQCPAFYQNMLRIQKCVTYNQVKGIFGFGDSDVIGKI 715
           DF+ +C   +QN+  I  C TYN  K   G  D ++I  +
Sbjct: 41  DFLAKCKTEFQNVKAI--CRTYNS-KFYMGIFDKEIIDNL 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,354
Number of Sequences: 5004
Number of extensions: 61608
Number of successful extensions: 136
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)