Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_M10
         (940 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88167-3|AAB42224.2|  363|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AC024214-15|AAM97983.1|  544|Caenorhabditis elegans Hypothetical...    29   6.3  
AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical...    29   6.3  
AF000191-1|AAB52884.1|  533|Caenorhabditis elegans Hypothetical ...    28   8.4  

>U88167-3|AAB42224.2|  363|Caenorhabditis elegans Hypothetical
           protein D2092.4 protein.
          Length = 363

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 512 KQNCETCKKLEQHVESLQEDFKKHLNAMSVKTVNSHLARLYNPSKEPALIFYR 670
           K  C TC +    VE + +D +       VKT +  +AR    +  P+L++YR
Sbjct: 104 KVPCPTCTEALSEVEEIDDDIEATGYVQVVKTNDRSVARELGINVFPSLVYYR 156


>AC024214-15|AAM97983.1|  544|Caenorhabditis elegans Hypothetical
           protein Y77E11A.12a protein.
          Length = 544

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 580 FLKVFL*TFYMLFQFLTCLTILLSE*DNKLFFFSYKFQKF 461
           FL V+   + +LF F TC+         +LFF +Y F+KF
Sbjct: 225 FLTVYWTCWTLLFAFGTCIGWTFLAIGIRLFFTTYLFEKF 264


>AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical
           protein Y77E11A.12b protein.
          Length = 644

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 580 FLKVFL*TFYMLFQFLTCLTILLSE*DNKLFFFSYKFQKF 461
           FL V+   + +LF F TC+         +LFF +Y F+KF
Sbjct: 325 FLTVYWTCWTLLFAFGTCIGWTFLAIGIRLFFTTYLFEKF 364


>AF000191-1|AAB52884.1|  533|Caenorhabditis elegans Hypothetical
           protein T23C6.3 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +2

Query: 506 FTKQNCE---TCKKLEQHVESLQEDFKKHLNAMSVKTVNSHLARLYNPSKE 649
           +TK+N +   TC+KL   + ++   FK+    MSV+TV   +  +    +E
Sbjct: 82  YTKRNRDEIVTCQKLFSEITAIMRRFKQLTEEMSVETVEVKIKSMIKDCQE 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,229,681
Number of Sequences: 27780
Number of extensions: 207115
Number of successful extensions: 460
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)