Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_M07
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    27   3.7  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    27   4.9  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   6.5  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   8.6  

>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = -1

Query: 385 DRAQRVSER-----GSGRAPNTQTASSPRVGRFINAEKTSHTS-TLNLKHKMNAIVVVNL 224
           DRA R  ER     G  +  ++   + P +     AE T H S TL L H   A + + L
Sbjct: 123 DRALRYLERLRDDTGIKKIMDSHRWTVPLLSEMDPAEHTRHDSKTLGLNHNQGAHIELRL 182

Query: 223 FIAAYNGYK 197
               Y+G++
Sbjct: 183 RTDRYDGFR 191


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = -1

Query: 355 SGRAPNTQTASSPRVGRFINAEKTSHTSTLNLKHKMNAIVVVNLFIAAYNGYK*SNSITN 176
           S R P  +  ++    R I+AE  S TST N +H     + +N  + + +  + +N I  
Sbjct: 518 SPRTPLPRVKNTQNPSRSISAEPPSATSTANRRHPTANRIDINARLNSASRSRSANMIRQ 577

Query: 175 FTNKAFFSLHAS 140
             N +  ++ +S
Sbjct: 578 GANGSDSNMSSS 589


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 674 YRIPVRLSPFGKRGASHSSRCXY 742
           YRIP R  PF   GA   + C +
Sbjct: 477 YRIPHRFEPFNSLGAQWCAHCGF 499


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 400 SPQPNDRAQRVSERGSGRAPNTQTASSPRVGRFINAEKTSHTSTLNL 260
           SPQP  R++      SGR+    + +S R   + N    S  S +++
Sbjct: 537 SPQPTRRSRTPIRSLSGRSSVASSRNSSRTRSYSNVSSASSNSLISI 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,814
Number of Sequences: 5004
Number of extensions: 57850
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)