Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_M06
         (992 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           35   0.088
02_05_0686 - 30900748-30902167,30903442-30904742                       31   1.9  
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066     29   4.4  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    29   4.4  
03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392...    29   5.8  
06_03_1414 + 30012195-30012360,30012448-30012830                       29   7.6  

>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 35.1 bits (77), Expect = 0.088
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = +2

Query: 560 PPPXGGXXXFXXGGGXXPPPPXXXXXXXGGGXPPP 664
           PPP         G G  PPPP       GGG PPP
Sbjct: 353 PPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPP 387


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +2

Query: 560 PPPXGGXXXFXXGGGXXPPPPXXXXXXXGGGXPPP 664
           PPP  G        G  PPPP       GG  PPP
Sbjct: 347 PPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPP 381


>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
          Length = 646

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +1

Query: 565 PPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
           P  GG       G  PPPPP     +  G PPP
Sbjct: 409 PAAGGYTSQPYMGAPPPPPPGSYAPVPWGQPPP 441


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
 Frame = +1

Query: 562  PPP---RGGXXFXXG-GGXXPPPPPXXXXXLXGGXPPP 663
            PPP   RGG       GG  PPPPP       GG P P
Sbjct: 1164 PPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTP 1201



 Score = 28.7 bits (61), Expect = 7.6
 Identities = 16/34 (47%), Positives = 16/34 (47%)
 Frame = +1

Query: 562  PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
            PPP GG      GG   PPPP       GG PPP
Sbjct: 1151 PPPVGGL-----GGPPAPPPPAG---FRGGTPPP 1176


>03_01_0522 -
           3919120-3919696,3919835-3919919,3919955-3919985,
           3920078-3920158,3920271-3920338,3920645-3920698,
           3921023-3922379
          Length = 750

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 598 GGXXPPPPPXXXXXLXGGXPPP 663
           GG  PPPPP       G  PPP
Sbjct: 595 GGTLPPPPPTQQPSAFGTLPPP 616


>06_03_1414 + 30012195-30012360,30012448-30012830
          Length = 182

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 621 GGGGXXPPPXXKXXXPPXGGG 559
           GGGG  PPP      PP  GG
Sbjct: 135 GGGGGSPPPSGVPLHPPAAGG 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,137,407
Number of Sequences: 37544
Number of extensions: 313013
Number of successful extensions: 1375
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2905255520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)