Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_M06
(992 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 39 0.005
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 39 0.005
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 39 0.005
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 36 0.059
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 36 0.059
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 36 0.059
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.55
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.55
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 31 0.96
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 31 1.7
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 31 1.7
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 31 1.7
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 31 1.7
AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical ... 30 2.2
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 3.9
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 5.1
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 5.1
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 29 5.1
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 28 9.0
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 28 9.0
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 28 9.0
AC025722-2|AAK68508.1| 605|Caenorhabditis elegans Hypothetical ... 28 9.0
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 39.1 bits (87), Expect = 0.005
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP GG GG PPPPP + GG PPP
Sbjct: 729 PPPPGGLP-PITGGPPPPPPPGGLPPISGGPPPP 761
Score = 35.9 bits (79), Expect = 0.045
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP G GG PPPPP + GG PPP
Sbjct: 713 PPPPPGLP-PITGGPPPPPPPGGLPPITGGPPPP 745
Score = 33.5 bits (73), Expect = 0.24
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 9/43 (20%)
Frame = +1
Query: 562 PPPRGGXXFXXGG---------GXXPPPPPXXXXXLXGGXPPP 663
PPP GG GG G PPPPP GG PPP
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -3
Query: 660 GGXPPPQXXXXXXGGGGXXPPPXXKXXXPPXGGGKXXXXP 541
GG PPP G PPP PP GG P
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 763
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -3
Query: 660 GGXPPPQXXXXXXGGGGXXPPPXXKXXXPPXGGGKXXXXP 541
GG PPP GG PPP PP GG P
Sbjct: 711 GGPPPPPGLPPITGG---PPPPPPPGGLPPITGGPPPPPP 747
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 39.1 bits (87), Expect = 0.005
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP GG GG PPPPP + GG PPP
Sbjct: 729 PPPPGGLP-PITGGPPPPPPPGGLPPISGGPPPP 761
Score = 35.9 bits (79), Expect = 0.045
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP G GG PPPPP + GG PPP
Sbjct: 713 PPPPPGLP-PITGGPPPPPPPGGLPPITGGPPPP 745
Score = 33.5 bits (73), Expect = 0.24
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 9/43 (20%)
Frame = +1
Query: 562 PPPRGGXXFXXGG---------GXXPPPPPXXXXXLXGGXPPP 663
PPP GG GG G PPPPP GG PPP
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -3
Query: 660 GGXPPPQXXXXXXGGGGXXPPPXXKXXXPPXGGGKXXXXP 541
GG PPP G PPP PP GG P
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 763
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -3
Query: 660 GGXPPPQXXXXXXGGGGXXPPPXXKXXXPPXGGGKXXXXP 541
GG PPP GG PPP PP GG P
Sbjct: 711 GGPPPPPGLPPITGG---PPPPPPPGGLPPITGGPPPPPP 747
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 39.1 bits (87), Expect = 0.005
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP GG GG PPPPP + GG PPP
Sbjct: 312 PPPPGGLP-PITGGPPPPPPPGGLPPISGGPPPP 344
Score = 35.9 bits (79), Expect = 0.045
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP G GG PPPPP + GG PPP
Sbjct: 296 PPPPPGLP-PITGGPPPPPPPGGLPPITGGPPPP 328
Score = 33.5 bits (73), Expect = 0.24
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 9/43 (20%)
Frame = +1
Query: 562 PPPRGGXXFXXGG---------GXXPPPPPXXXXXLXGGXPPP 663
PPP GG GG G PPPPP GG PPP
Sbjct: 328 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 370
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -3
Query: 660 GGXPPPQXXXXXXGGGGXXPPPXXKXXXPPXGGGKXXXXP 541
GG PPP G PPP PP GG P
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 346
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -3
Query: 660 GGXPPPQXXXXXXGGGGXXPPPXXKXXXPPXGGGKXXXXP 541
GG PPP GG PPP PP GG P
Sbjct: 294 GGPPPPPGLPPITGG---PPPPPPPGGLPPITGGPPPPPP 330
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 35.5 bits (78), Expect = 0.059
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP GG G PPPPP G PPP
Sbjct: 282 PPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 315
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +2
Query: 560 PPPXGGXXXFXXGGGXXPPPPXXXXXXXGGGXPPP 664
PPP G G PPP GG PPP
Sbjct: 257 PPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP+G G PPP G PPP
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPP 274
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +1
Query: 571 RGGXXFXXGGGXXPPPPPXXXXXLXG-GXPPP 663
RG G PPPPP L G G PPP
Sbjct: 226 RGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPP 257
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 35.5 bits (78), Expect = 0.059
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP GG G PPPPP G PPP
Sbjct: 303 PPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 336
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +2
Query: 560 PPPXGGXXXFXXGGGXXPPPPXXXXXXXGGGXPPP 664
PPP G G PPP GG PPP
Sbjct: 278 PPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP+G G PPP G PPP
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPP 295
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +1
Query: 571 RGGXXFXXGGGXXPPPPPXXXXXLXG-GXPPP 663
RG G PPPPP L G G PPP
Sbjct: 247 RGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPP 278
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 35.5 bits (78), Expect = 0.059
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP GG G PPPPP G PPP
Sbjct: 288 PPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 321
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +2
Query: 560 PPPXGGXXXFXXGGGXXPPPPXXXXXXXGGGXPPP 664
PPP G G PPP GG PPP
Sbjct: 263 PPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP+G G PPP G PPP
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPP 280
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +1
Query: 571 RGGXXFXXGGGXXPPPPPXXXXXLXG-GXPPP 663
RG G PPPPP L G G PPP
Sbjct: 232 RGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPP 263
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.55
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -3
Query: 663 GGGXPPPQXXXXXXGGGGXXPPPXXKXXXPPXGGGKXXXXP 541
GG PPP G G PPP + PP G G P
Sbjct: 345 GGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPP 385
Score = 31.5 bits (68), Expect = 0.96
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP G + GG PPPPP G PPP
Sbjct: 335 PPPPPGMRYP--GGMPPPPPPRYPSAGPGMYPPP 366
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP G G PPPPP GG PPP
Sbjct: 318 PPPPPSRFGPPGMGGMPPPPPPGMRY-PGGMPPP 350
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +2
Query: 560 PPPXGGXXXFXXGGGXXPPPPXXXXXXXGGGXPPP 664
PPP G G PPPP GG PPP
Sbjct: 317 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPP 351
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.55
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -3
Query: 663 GGGXPPPQXXXXXXGGGGXXPPPXXKXXXPPXGGGKXXXXP 541
GG PPP G G PPP + PP G G P
Sbjct: 355 GGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPP 395
Score = 31.5 bits (68), Expect = 0.96
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP G + GG PPPPP G PPP
Sbjct: 345 PPPPPGMRYP--GGMPPPPPPRYPSAGPGMYPPP 376
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP G G PPPPP GG PPP
Sbjct: 328 PPPPPSRFGPPGMGGMPPPPPPGMRY-PGGMPPP 360
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +2
Query: 560 PPPXGGXXXFXXGGGXXPPPPXXXXXXXGGGXPPP 664
PPP G G PPPP GG PPP
Sbjct: 327 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPP 361
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 31.5 bits (68), Expect = 0.96
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP G G PPPPP GG PPP
Sbjct: 522 PPPMPGMAPLSTGAPTPPPPP-PVGMANGGPPPP 554
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +2
Query: 560 PPPXGGXXXFXXGGGXXPPPPXXXXXXXGGGXPPP 664
PPP G G PPPP G PPP
Sbjct: 522 PPPMPGMAPLSTGAPTPPPPPPVGMANGGPPPPPP 556
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +1
Query: 595 GGGXXPPPPPXXXXXLXGGXPPP 663
GGG PPPPP GG PPP
Sbjct: 675 GGGQGPPPPP-QGQQYYGGPPPP 696
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +1
Query: 595 GGGXXPPPPPXXXXXLXGGXPPP 663
GGG PPPPP GG PPP
Sbjct: 675 GGGQGPPPPP-QGQQYYGGPPPP 696
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = +2
Query: 542 GXXXSFPPPXGGXXXFXXGGGXXPPPPXXXXXXXGGGXPPP 664
G SFPPP G G PPPP G G PPP
Sbjct: 765 GPMSSFPPPPRG------GMHHMPPPPSFRGGRGGHGGPPP 799
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Frame = +1
Query: 556 FSPPPRGGXX-------FXXGGGXXPPPPPXXXXXLXGGXPP 660
F PPPRGG F G G PPP GG PP
Sbjct: 770 FPPPPRGGMHHMPPPPSFRGGRGGHGGPPPPHFDRRGGGGPP 811
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXX--PPPPPXXXXXLXGGXPPP 663
PPP G G PPPPP L G PPP
Sbjct: 544 PPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPP 579
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP G PPPPP + GG PPP
Sbjct: 562 PPPPPPLPQNLSGAPPPPPPP---PPMLGGPPPP 592
>AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.6 protein.
Length = 74
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP G GGG PPPPP PPP
Sbjct: 35 PPPACGNP--CGGGFGPPPPPFGPVGYALPPPPP 66
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
P P G G G PPPPP GG PPP
Sbjct: 68 PVPNGFIPPPPGPGGIPPPPP----MFAGGIPPP 97
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -1
Query: 662 GGGXPPXXXXXXXGGGGGXXPPPXXXXXXPRGGG 561
GGG GGGGG PPP GGG
Sbjct: 30 GGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGG 63
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -1
Query: 662 GGGXPPXXXXXXXGGGGGXXPPPXXXXXXPRGGG 561
GGG GGGGG PPP GGG
Sbjct: 30 GGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGG 63
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -3
Query: 663 GGGXPPPQXXXXXXGGGGXXPPPXXKXXXPPXG 565
GGG PP+ GGG PP K P G
Sbjct: 622 GGGGGPPRGPGGGGGGGPTGPPAPPKPPAKPRG 654
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -3
Query: 663 GGGXPPPQXXXXXXGGGGXXPPPXXKXXXPPXG 565
GGG PP+ GGG PP K P G
Sbjct: 622 GGGGGPPRGPGGGGGGGPTGPPAPPKPPAKPRG 654
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Frame = +1
Query: 565 PPRGGXXFXXGGGXXPPPP---PXXXXXLXGGXPPP 663
P GG G G PPPP P GG PPP
Sbjct: 20 PSAGGGGGGCGCGAPPPPPACAPPPAPACGGGAPPP 55
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP GG G PPPPP PPP
Sbjct: 219 PPPIGGIAPVNAHGA-PPPPPLPPVGAGAPPPPP 251
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP GG G PPPPP PPP
Sbjct: 205 PPPIGGIAPVNAHGA-PPPPPLPPVGAGAPPPPP 237
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +1
Query: 562 PPPRGGXXFXXGGGXXPPPPPXXXXXLXGGXPPP 663
PPP GG G PPPPP PPP
Sbjct: 205 PPPIGGIAPVNAHGA-PPPPPLPPVGAGAPPPPP 237
>AC025722-2|AAK68508.1| 605|Caenorhabditis elegans Hypothetical
protein Y50D4C.3 protein.
Length = 605
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 565 PPRGGXXFXXGGGXXPPPPP 624
PPRGG F G PPPPP
Sbjct: 478 PPRGGQ-FHGGSQQGPPPPP 496
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,998,872
Number of Sequences: 27780
Number of extensions: 153342
Number of successful extensions: 1188
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2594635024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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