Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_M04
(891 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 35 0.068
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.36
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.36
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.36
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 32 0.63
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 32 0.63
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 7.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 7.8
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 35.1 bits (77), Expect = 0.068
Identities = 21/49 (42%), Positives = 22/49 (44%)
Frame = -3
Query: 343 GGVXXPPPXKIXKGXGAXFPPQKGXPPRGAREPGXXXXXXFPRGXPFGK 197
GG PPP G GA PP G PP GA PG P G PF +
Sbjct: 431 GGFGPPPPG----GPGAYGPPPTGFPPVGAPPPG---AAGAPGGNPFAR 472
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 606 PPXXXFXPPPPXQXGXXFFXXXPPPP 683
PP F PPPP Q F PPPP
Sbjct: 247 PPVQEFAPPPPQQQQQQF--QAPPPP 270
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = -3
Query: 340 GVXXPPPXKIXKGXGAXFPPQKGXPPRGAREPGXXXXXXFPRGXPFGKFXXKXYFPGXVG 161
G PPP G P G PP G PG P+G P G PG G
Sbjct: 388 GAFAPPPSAFGAPQGPGGPGGYGPPPPGG--PGAPGSYGPPQGGPGGFGPPPPGGPGAYG 445
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.7 bits (71), Expect = 0.36
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 603 PPPXXXFXPPPPXQXGXXFFXXXPPPPP 686
PPP PPPP F PPPPP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 32.3 bits (70), Expect = 0.48
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 603 PPPXXXFXPPPPXQXGXXFFXXXPPPPP 686
PPP PPPP F PPPPP
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 606 PPXXXFXPPPPXQXGXXFFXXXPPPPP 686
PP PPPP G PPPPP
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPP 746
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 606 PPXXXFXPPPPXQXGXXFFXXXPPPPP 686
PP PPPP G PPPPP
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPP 762
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.7 bits (71), Expect = 0.36
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 603 PPPXXXFXPPPPXQXGXXFFXXXPPPPP 686
PPP PPPP F PPPPP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 32.3 bits (70), Expect = 0.48
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 603 PPPXXXFXPPPPXQXGXXFFXXXPPPPP 686
PPP PPPP F PPPPP
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKGGPPPPP 788
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 606 PPXXXFXPPPPXQXGXXFFXXXPPPPP 686
PP PPPP G PPPPP
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPP 746
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 606 PPXXXFXPPPPXQXGXXFFXXXPPPPP 686
PP PPPP G PPPPP
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPP 762
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.7 bits (71), Expect = 0.36
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 603 PPPXXXFXPPPPXQXGXXFFXXXPPPPP 686
PPP PPPP F PPPPP
Sbjct: 345 PPPPGGCPPPPPPPPPGGFKGGPPPPPP 372
Score = 32.3 bits (70), Expect = 0.48
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 603 PPPXXXFXPPPPXQXGXXFFXXXPPPPP 686
PPP PPPP F PPPPP
Sbjct: 344 PPPPPGGCPPPPPPPPPGGFKGGPPPPP 371
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 606 PPXXXFXPPPPXQXGXXFFXXXPPPPP 686
PP PPPP G PPPPP
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPP 329
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 606 PPXXXFXPPPPXQXGXXFFXXXPPPPP 686
PP PPPP G PPPPP
Sbjct: 319 PPITGGPPPPPPPGGLPPISGGPPPPP 345
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 31.9 bits (69), Expect = 0.63
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 603 PPPXXXFXPPPPXQXGXXFFXXXPPPPP 686
PPP F PPPP G PPPP
Sbjct: 298 PPPRGHFPPPPPHFMGRGMPPPFMPPPP 325
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 31.9 bits (69), Expect = 0.63
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 603 PPPXXXFXPPPPXQXGXXFFXXXPPPPP 686
PPP F PPPP G PPPP
Sbjct: 298 PPPRGHFPPPPPHFMGRGMPPPFMPPPP 325
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 627 PPPPXQXGXXFFXXXPPPPP 686
PPPP G + PPPPP
Sbjct: 41 PPPPPPCGGGYEAPPPPPPP 60
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 603 PPPXXXFXPPPPXQXGXXFFXXXPPPPP 686
PPP PPPP G PPPPP
Sbjct: 97 PPPMMGGIPPPPPMFG----APPPPPPP 120
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Frame = +3
Query: 603 PPPXXXFXPPPPXQXG-----XXFFXXXPPPPP 686
PP F PPPP G F PPPPP
Sbjct: 67 PPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPP 99
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 627 PPPPXQXGXXFFXXXPPPPP 686
PPPP + G PPPPP
Sbjct: 319 PPPPSRFGPPGMGGMPPPPP 338
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 627 PPPPXQXGXXFFXXXPPPPP 686
PPPP + G PPPPP
Sbjct: 329 PPPPSRFGPPGMGGMPPPPP 348
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,702,735
Number of Sequences: 27780
Number of extensions: 178707
Number of successful extensions: 936
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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