Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_M03
         (932 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    27   0.81 
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            25   3.3  

>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 27.1 bits (57), Expect = 0.81
 Identities = 26/95 (27%), Positives = 27/95 (28%), Gaps = 8/95 (8%)
 Frame = -3

Query: 648 HRGXXGGXGPXGXPXE--KXFFXGXPPXXGXXKXPPXGGXKXXPPPQXXGXGXF------ 493
           HRG  G  GP G P    +    G P   G        G     PP   G          
Sbjct: 61  HRGEKGNSGPVGPPGAPGRDGMPGAPGLPGSKGVKGDPGLSMVGPPGPKGNPGLRGPKGE 120

Query: 492 XGGXGXGXXKKXPXXXGGGGFFXXXKTPXPPPXXG 388
            GG G       P   G  G      TP PP   G
Sbjct: 121 RGGMGDRGDPGLPGSLGYPGEKGDLGTPGPPGYPG 155


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 586 GXPPXXGXXXXXPXGGXKXXPPPPXPG 506
           G P   G       GG    PPPP PG
Sbjct: 511 GPPHGAGYDGRDLTGGPLGPPPPPPPG 537


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 469,897
Number of Sequences: 2352
Number of extensions: 7430
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 101708946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)