Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_M01
(893 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 190 3e-49
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 76 6e-15
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 74 2e-14
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 68 2e-12
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 66 8e-12
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 60 4e-10
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 60 4e-10
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 57 4e-09
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 54 2e-08
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 54 2e-08
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 50 6e-07
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 43 7e-05
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 39 8e-04
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 27 2.7
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 27 3.6
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe... 26 8.3
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 190 bits (462), Expect = 3e-49
Identities = 84/151 (55%), Positives = 107/151 (70%), Gaps = 1/151 (0%)
Frame = +2
Query: 236 GATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREF 415
GA RL ++YL L+ +PV V A+P NILEWHY++ GP +PYEGG YHG +IFP ++
Sbjct: 5 GAYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDY 64
Query: 416 PFKPPSIYMITPNGRFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTPTLGS 595
PFKPP+I MITP+GRF+TNTRLCLS +DFHP +WNP+W +STIL GL+SFM T G
Sbjct: 65 PFKPPAIRMITPSGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTSDEITTGG 124
Query: 596 IETSEYQKRCLAAESLXINI-KNKMFCELFP 685
I TSE +R A ++ NI N F +FP
Sbjct: 125 IVTSESTRRTYAKDTKRFNIMDNPKFLIMFP 155
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 76.2 bits (179), Expect = 6e-15
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Frame = +2
Query: 239 ATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFP 418
A R+ ++ L DP +A PV ++ W + GP SPY GG + I FP ++P
Sbjct: 2 ALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYP 61
Query: 419 FKPPSIYMITP--NGRFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTP 583
FKPP + T + +N +CL D D W+PA +IS +L + S + + P
Sbjct: 62 FKPPKVNFTTRIYHPNINSNGSICL---DILRDQWSPALTISKVLLSICSLLTDPNP 115
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 74.1 bits (174), Expect = 2e-14
Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Frame = +2
Query: 233 TGATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPRE 412
T A RL +D+ R++ DP V+A PV N++ W+ V+ GP +P+E G + + F +
Sbjct: 3 TTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQ 62
Query: 413 FPFKPPSIYMITP--NGRFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFM 568
+P KPP + ++ + N LCL I + W+P + ++ ILT + S +
Sbjct: 63 YPNKPPLVKFVSTMFHPNVYANGELCLDILQ---NRWSPTYDVAAILTSIQSLL 113
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 67.7 bits (158), Expect = 2e-12
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Frame = +2
Query: 239 ATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFP 418
++ RL ++Y L+ P+P + V N+ W GP S Y GG +H + FP ++P
Sbjct: 8 SSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYP 67
Query: 419 FKPPSIYMITP--NGRFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTP 583
F+PP+I T + F + +CL+I + P+ + ++L +L + E P
Sbjct: 68 FQPPTIEFTTRIYHPNFDSEGNVCLAI--LKQQVFKPSIKLRSVLEQILQLLREPNP 122
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 65.7 bits (153), Expect = 8e-12
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Frame = +2
Query: 248 RLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKP 427
R+ ++ L DP P + A P N+ + ++GP++S YEGG +H ++ P E+P P
Sbjct: 6 RIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMP 65
Query: 428 PSIYMITP--NGRFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTP 583
P++ +T + R+CLS W+PA I T+L + + M P
Sbjct: 66 PNVRFLTKIYHPNVDKLGRICLSTL---KKDWSPALQIRTVLLSIQALMGAPNP 116
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 60.1 bits (139), Expect = 4e-10
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Frame = +2
Query: 242 TSRLKQDYLRLKNDPVPYVTAEP-VPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFP 418
T RL+ + + L P ++A P SN+L W + GP + YEG + + FP +P
Sbjct: 30 TKRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYP 89
Query: 419 FKPPSIYMITP--NGRFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLE 574
+ PP+I +P + + +CL D D W+ +++ TIL L S + E
Sbjct: 90 YSPPTIIFTSPMWHPNVDMSGNICL---DILKDKWSAVYNVQTILLSLQSLLGE 140
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 60.1 bits (139), Expect = 4e-10
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Frame = +2
Query: 230 VTGATSRLKQDYLRLK-NDPVPYVTAEPVPS-NILEWHYVVKGPEKSPYEGGYYHGKIIF 403
+ + RL ++Y + D + +PV ++ W V++GP ++PYEGG + I
Sbjct: 1 MNSSIKRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHV 60
Query: 404 PREFPFKPPSIY----MITPNGRFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFM 568
+P PPS+Y ++ PN + TN +C+ I H W+PAWS+ + ++S +
Sbjct: 61 HEGYPISPPSVYFQTKIVHPNISW-TNGEVCMDILKTH---WSPAWSLQSACLAIISLL 115
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 56.8 bits (131), Expect = 4e-09
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Frame = +2
Query: 275 KNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKPPSIYMITP- 451
KN P + +I EW ++ GPE + YEGG++H + FP+++P PP + T
Sbjct: 19 KNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEI 78
Query: 452 -NGRFKTNTRLCLSITDFHP------------DTWNPAWSISTILTGLLSFM 568
+ N +C+SI HP + W P S TIL ++S +
Sbjct: 79 WHPNVHPNGEVCISI--LHPPGDDKYGYEDAGERWLPVHSPETILISVISML 128
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 54.4 bits (125), Expect = 2e-08
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Frame = +2
Query: 239 ATSRLKQDYLRLKNDPVPYVTAEPV-PSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREF 415
A RL ++Y L + +TA P + W +++GP+ +P+EGG Y + FP ++
Sbjct: 6 ALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDY 65
Query: 416 PFKPPSI----YMITPNGRFKTNTRLCLSIT----------DFHPDTWNPAWSISTILTG 553
P PP++ PN +K T +C+SI + + W+P S+ IL
Sbjct: 66 PLGPPTLKFECEFFHPN-VYKDGT-VCISILHAPGDDPNMYESSSERWSPVQSVEKILLS 123
Query: 554 LLSFMLEKTPTLGS 595
++S + E G+
Sbjct: 124 VMSMLAEPNDESGA 137
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 54.4 bits (125), Expect = 2e-08
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Frame = +2
Query: 248 RLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKP 427
R+ ++ ++ D + + +I + +GPE +PYEGGY+ I P ++PF+P
Sbjct: 8 RIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRP 67
Query: 428 PSIYMIT----PNGRFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTPT 586
P + T PN +T +CL D D W+P +++ + L L S + P+
Sbjct: 68 PKMNFDTKIYHPNVSSQTGA-ICL---DILKDQWSPVYTMKSALISLQSLLCTPEPS 120
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 49.6 bits (113), Expect = 6e-07
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +2
Query: 320 NILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKPPSIYMITP--NGRFKTNTRLCLSI 493
+++ W + G K+ +EGG Y + FP E+P +PP P + + +CLSI
Sbjct: 37 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSI 96
Query: 494 TDFHPDTWNPAWSISTILTGL 556
+ + W PA +I IL G+
Sbjct: 97 LN-EEEGWKPAITIKQILLGI 116
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 42.7 bits (96), Expect = 7e-05
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +2
Query: 311 VPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKPPSIYMITPNGRFKTN-TRLCL 487
V N+ E++ GP ++PY GG + + P E+P+K PSI + N F N L
Sbjct: 25 VNDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFV--NRIFHPNIDELSG 82
Query: 488 SI-TDFHPDTWNPAWSISTILTGLLSFML 571
S+ D TW+P + + I L +L
Sbjct: 83 SVCLDVINQTWSPMFDMINIFEVFLPQLL 111
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 39.1 bits (87), Expect = 8e-04
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Frame = +2
Query: 230 VTGATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPR 409
++ A R+++D L+ P T+ P P + H ++ P++ Y+GG + +I
Sbjct: 21 ISPAQIRIQKDVTDLEI-PSTMSTSWPDPIKLNVLHLEIR-PDEGYYKGGKFKFRIQIDD 78
Query: 410 EFPFKPPSIYMIT----PNGRFKTNTRLCLSITDFHPDTWNPAWSISTILTGL 556
+P PP + + PN + N +CL+I WNP ++++IL GL
Sbjct: 79 NYPHDPPKVKCLNKIYHPNIDIEGN--VCLNIL---RQDWNPVLNLNSILVGL 126
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 314 PSNILEWHYVVKGPEKSPYEG--GYYHGKIIFPREFPFK 424
PSN L ++V P S +G Y HGK +FP + FK
Sbjct: 311 PSNFLSTYFV--SPLVSAIDGTVDYLHGKSLFPEKRNFK 347
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +2
Query: 329 EWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKPPSIYMIT 448
+W+ + GP S +E Y KI +P PP + ++
Sbjct: 40 DWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVS 79
>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 816 QIXQNTIHXRLWXRGYFICTTVL 748
++ +N +H RLW +F C VL
Sbjct: 216 KMLRNLLHKRLWISFFFACFVVL 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,332,753
Number of Sequences: 5004
Number of extensions: 70392
Number of successful extensions: 215
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -