Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_M01
(893 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 222 3e-58
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 177 9e-45
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 131 8e-31
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 76 4e-14
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 76 4e-14
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 75 5e-14
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 75 5e-14
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 69 6e-12
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 65 6e-11
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 60 2e-09
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 57 1e-08
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 52 6e-07
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 50 2e-06
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 49 4e-06
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 49 4e-06
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 47 2e-05
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 47 2e-05
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 44 2e-04
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 39 0.004
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 38 0.013
AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical... 36 0.052
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 34 0.16
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 34 0.16
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ... 31 1.1
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 30 1.9
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 29 5.9
Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical pr... 28 7.8
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 222 bits (542), Expect = 3e-58
Identities = 93/151 (61%), Positives = 123/151 (81%)
Frame = +2
Query: 233 TGATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPRE 412
T A RLK+DY RL +PVP++ A P+ +NILEW Y++ G K+PYEGG Y GK++FP++
Sbjct: 7 TVALQRLKKDYQRLLKEPVPFMKAAPLETNILEWRYIIIGAPKTPYEGGIYMGKLLFPKD 66
Query: 413 FPFKPPSIYMITPNGRFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTPTLG 592
FPFKPP+I M+TPNGRF+TNTRLCLSI+D+HPDTWNPAW++STI+TGL+SFM + PTLG
Sbjct: 67 FPFKPPAILMLTPNGRFQTNTRLCLSISDYHPDTWNPAWTVSTIITGLMSFMNDNQPTLG 126
Query: 593 SIETSEYQKRCLAAESLXINIKNKMFCELFP 685
S+ TSE +++ LA +S N+K+K FC LFP
Sbjct: 127 SLVTSESERKLLAKKSKQWNLKDKSFCALFP 157
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 177 bits (431), Expect = 9e-45
Identities = 79/152 (51%), Positives = 103/152 (67%)
Frame = +2
Query: 203 IHVNMAKTKVTGATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGY 382
+ V A T + A RL++DY +L DPV + A P NILEWHY ++G +P+ GGY
Sbjct: 8 VSVPAAGTASSSAVRRLQKDYAKLMQDPVDGIKALPNEDNILEWHYCLRGSPDTPFYGGY 67
Query: 383 YHGKIIFPREFPFKPPSIYMITPNGRFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLS 562
Y GK+IF FP+ PP+I MITPNGRF+TNTRLCLSI+D+HP++WNP W++S IL GL S
Sbjct: 68 YWGKVIFKENFPWSPPAITMITPNGRFQTNTRLCLSISDYHPESWNPGWTVSAILIGLHS 127
Query: 563 FMLEKTPTLGSIETSEYQKRCLAAESLXINIK 658
FM E +P GSI + +R AA S N+K
Sbjct: 128 FMNENSPAAGSIAGTPQDQRMYAAASKEFNVK 159
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 131 bits (316), Expect = 8e-31
Identities = 59/138 (42%), Positives = 91/138 (65%), Gaps = 2/138 (1%)
Frame = +2
Query: 224 TKVTGATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIF 403
TK G RL ++ + L+ P A+P+ N+ EWH+ ++G + +EGG YHG+IIF
Sbjct: 7 TKNAGVR-RLMKEAMELRQ-PTEMYHAQPMEDNLFEWHFTIRGTLGTDFEGGIYHGRIIF 64
Query: 404 PREFPFKPPSIYMITPNGRFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTP 583
P ++P KPP++ ++TPNGRF+ N ++CLSI+ +HP+TW P+WSI T L L+ F L TP
Sbjct: 65 PADYPMKPPNLILLTPNGRFELNKKVCLSISGYHPETWLPSWSIRTALLALIGF-LPSTP 123
Query: 584 --TLGSIETSEYQKRCLA 631
LGS++ +++ LA
Sbjct: 124 GGALGSLDYPPKERQRLA 141
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 75.8 bits (178), Expect = 4e-14
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Frame = +2
Query: 239 ATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFP 418
A R++++ L DP +A PV ++ W + GP +SPY+GG + I FP ++P
Sbjct: 2 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 61
Query: 419 FKPPSIYMITP--NGRFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTP 583
FKPP + T + +N +CL D W+PA +IS +L + S + + P
Sbjct: 62 FKPPKVAFTTRIYHPNINSNGSICL---DILRSQWSPALTISKVLLSICSLLCDPNP 115
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 75.8 bits (178), Expect = 4e-14
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Frame = +2
Query: 239 ATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFP 418
A R++++ L DP +A PV ++ W + GP +SPY+GG + I FP ++P
Sbjct: 2 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 61
Query: 419 FKPPSIYMITP--NGRFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTP 583
FKPP + T + +N +CL D W+PA +IS +L + S + + P
Sbjct: 62 FKPPKVAFTTRIYHPNINSNGSICL---DILRSQWSPALTISKVLLSICSLLCDPNP 115
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 75.4 bits (177), Expect = 5e-14
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 3/132 (2%)
Frame = +2
Query: 233 TGATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPRE 412
T + RL +D+ +L+ DP V+ P NIL W ++ GP+++P+E G + + F E
Sbjct: 3 TPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEE 62
Query: 413 FPFKPPSIYMITPNGRFKTNTRLCLSI-TDFHPDTWNPAWSISTILTGLLSFMLEKTPT- 586
+P KPP++ I+ F N SI D + W+P + ++ ILT + S + E P
Sbjct: 63 YPNKPPTVKFISK--MFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNS 120
Query: 587 -LGSIETSEYQK 619
S+ YQ+
Sbjct: 121 PANSLAAQLYQE 132
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 75.4 bits (177), Expect = 5e-14
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 3/132 (2%)
Frame = +2
Query: 233 TGATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPRE 412
T + RL +D+ +L+ DP V+ P NIL W ++ GP+++P+E G + + F E
Sbjct: 3 TPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEE 62
Query: 413 FPFKPPSIYMITPNGRFKTNTRLCLSI-TDFHPDTWNPAWSISTILTGLLSFMLEKTPT- 586
+P KPP++ I+ F N SI D + W+P + ++ ILT + S + E P
Sbjct: 63 YPNKPPTVKFISK--MFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNS 120
Query: 587 -LGSIETSEYQK 619
S+ YQ+
Sbjct: 121 PANSLAAQLYQE 132
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 68.5 bits (160), Expect = 6e-12
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Frame = +2
Query: 248 RLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKP 427
R+ ++ RL DPVP ++A P SN +H ++ GP+ SP+ GG + ++ P E+P
Sbjct: 8 RIIKETQRLLADPVPGISANPDESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYPMAA 67
Query: 428 PSIYMITP--NGRFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTP 583
P + +T + R+CL D D W+PA I T+L + + + P
Sbjct: 68 PKVRFMTKIYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNP 118
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 65.3 bits (152), Expect = 6e-11
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Frame = +2
Query: 233 TGATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPRE 412
+GA L + L++ PV T + N+ W + GP K+ Y+GGY+ I FP
Sbjct: 9 SGALRALTMELKNLQSQPVEGFTIDVNEDNLFVWTVGIYGPPKTLYQGGYFKASIRFPSN 68
Query: 413 FPFKPPSIYMITP--NGRFKTNTRLCLSIT----------DFHPDTWNPAWSISTILTGL 556
+P+ PPS+ T + N LC+SI + + WNP S+ TIL +
Sbjct: 69 YPYSPPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRTILLSV 128
Query: 557 LSFMLE-KTPTLGSIETS 607
+S + E T + +++ S
Sbjct: 129 ISLLNEPNTSSPANVDAS 146
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 60.5 bits (140), Expect = 2e-09
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Frame = +2
Query: 239 ATSRLKQDYLRLKNDPVP-YVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREF 415
AT RL+++ LKN V Y E +N+L+W V+ P+K PY G + I FP ++
Sbjct: 3 ATRRLQKELGDLKNCGVKAYENVECEETNLLKWT-VLLIPDKEPYNKGAFKVGITFPVDY 61
Query: 416 PFKPPSIYMITP--NGRFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTPT- 586
PFKPP + T + + CL I + W PA ++ LLS + E P+
Sbjct: 62 PFKPPKVAFETKIYHPNVDEEGKFCLPIVT--AENWKPATKTEQVMMALLSLINEPEPSH 119
Query: 587 -LGSIETSEYQK 619
+ + E+QK
Sbjct: 120 PIRADVAEEFQK 131
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 57.2 bits (132), Expect = 1e-08
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Frame = +2
Query: 239 ATSRLKQDYLRLKNDPVPYVTAEPVPS-NILEWHYVVKGPEKSPYEGGYYHGKIIFPREF 415
A RL +Y L P + A P+ N EW ++ GPE++ + G + +I FP+++
Sbjct: 5 ALKRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQDY 64
Query: 416 PFKPPSIYMITPNGRFKTNT----RLCLSIT----------DFHPDTWNPAWSISTILTG 553
P PP + G F N R+C+SI + + W+P SI IL
Sbjct: 65 PLSPPKMRFTC--GIFHPNIYADGRVCISILHAPGDDPTGYELSNERWSPVQSIEKILLS 122
Query: 554 LLSFMLE 574
++S + E
Sbjct: 123 VVSMLAE 129
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 52.0 bits (119), Expect = 6e-07
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Frame = +2
Query: 251 LKQDYLRLKNDPVPYVTAEPVPSN-ILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKP 427
LK+ ++ PV +A V N I +W +V GP + YEGG++ + FPR++P KP
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 428 PSIYMITP--NGRFKTNTRLCLSIT-DFHPDTWN---------PAWSISTILTGLLSFML 571
P + I+ + +C+SI D D W P ++ TIL ++S +
Sbjct: 68 PKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLT 127
Query: 572 E 574
+
Sbjct: 128 D 128
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 50.0 bits (114), Expect = 2e-06
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Frame = +2
Query: 239 ATSRLKQDYLRLKND-PVPYVTAEPVPSNIL-EWHYVVKGPEKSPYEGGYYHGKIIFPRE 412
AT RL ++ +LK++ P + SN L +W V G E + Y G + + F +
Sbjct: 5 ATRRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFTFGPQ 64
Query: 413 FPFKPPSIYM----ITPNGRFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKT 580
+PF P + I + +N +CLSI D W PA S+ ++ +LS +
Sbjct: 65 YPFNSPEVMFVGETIPAHPHIYSNGHICLSILS---DDWTPALSVQSVCLSILSMLSSSK 121
Query: 581 PTLGSIETSEYQKRC 625
I+ + Y + C
Sbjct: 122 EKKHPIDDAIYVRTC 136
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 49.2 bits (112), Expect = 4e-06
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Frame = +2
Query: 239 ATSRLKQDYLRLKND-PVPYVTAEPVPS-----NILEWHYVVKGPEKSPYEGGYYHGKII 400
A RL ++ + D P ++ A+PV + N+ W + G + + +EGG Y +++
Sbjct: 5 AAGRLAEERKHWRKDHPFGFI-AKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRIRML 63
Query: 401 FPREFPFKPPSIYMITP--NGRFKTNTRLCLSITDFHPDTWNPAWSISTILTGL 556
F +FP PP P + + +CLS+ D + D W P+ SI +L G+
Sbjct: 64 FKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKD-WKPSISIKQLLIGI 116
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 49.2 bits (112), Expect = 4e-06
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Frame = +2
Query: 239 ATSRLKQDYLRLKND-PVPYVTAEPVPS-----NILEWHYVVKGPEKSPYEGGYYHGKII 400
A RL ++ + D P ++ A+PV + N+ W + G + + +EGG Y +++
Sbjct: 5 AAGRLAEERKHWRKDHPFGFI-AKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRIRML 63
Query: 401 FPREFPFKPPSIYMITP--NGRFKTNTRLCLSITDFHPDTWNPAWSISTILTGL 556
F +FP PP P + + +CLS+ D + D W P+ SI +L G+
Sbjct: 64 FKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKD-WKPSISIKQLLIGI 116
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 47.2 bits (107), Expect = 2e-05
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 11/83 (13%)
Frame = +2
Query: 341 VVKGPEKSPYEGGYYHGKIIFPREFPFKPPSIYMITP---NGRFKTNT----RLCLSIT- 496
++ GP+ +PY G + I FP +PF PP +T N RF N ++CLSI
Sbjct: 448 LISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILG 507
Query: 497 --DFHP-DTWNPAWSISTILTGL 556
+ P + WNP S+ +L +
Sbjct: 508 TWEGRPEEKWNPYCSLMQVLVSI 530
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 47.2 bits (107), Expect = 2e-05
Identities = 23/96 (23%), Positives = 44/96 (45%)
Frame = +2
Query: 296 VTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKPPSIYMITPNGRFKTNT 475
+ E + N+ E ++GP +PY GG + I P ++PF PP++ T ++
Sbjct: 27 IMIEILNENLTEIKGHIRGPPDTPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSS 86
Query: 476 RLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTP 583
+ + D D W + ++ T+L + + M P
Sbjct: 87 QTGVICLDILKDQWAASLTLRTVLLSIQALMCTPEP 122
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 43.6 bits (98), Expect = 2e-04
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +2
Query: 317 SNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKPPSI 436
+N+++ +KGPE +PY GG + K+ P +PF+PP +
Sbjct: 48 NNLMDIKGFIKGPEGTPYAGGTFEIKVDIPEHYPFEPPKV 87
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 39.1 bits (87), Expect = 0.004
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 341 VVKGPEKSPYEGGYYHGKIIFPREFPFKPPSIYMIT 448
++KG E++PYEGG + I +PFK P++ IT
Sbjct: 384 IIKGVEETPYEGGIFELDIKIGESYPFKAPTVKFIT 419
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 37.5 bits (83), Expect = 0.013
Identities = 33/135 (24%), Positives = 55/135 (40%)
Frame = +2
Query: 185 NTQKLTIHVNMAKTKVTGATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKS 364
N+++ T +N K + R Q Y P+ + A+ S W V GP S
Sbjct: 29 NSREFTNEINTVKEEKAKWDERTPQGYTA---KPISFEGADIWCS----WICTVPGPRGS 81
Query: 365 PYEGGYYHGKIIFPREFPFKPPSIYMITPNGRFKTNTRLCLSITDFHPDTWNPAWSISTI 544
P+EGG Y + F ++P PP TP + R + + + W+ S+ +
Sbjct: 82 PWEGGEYEVSVNF-HKWPIIPPICEFKTPLHHPNVDLRGSIYLKMLEQEHWSSETSLKKL 140
Query: 545 LTGLLSFMLEKTPTL 589
L + + + TP L
Sbjct: 141 LREISNLL--ATPDL 153
>AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical
protein F52C6.12 protein.
Length = 78
Score = 35.5 bits (78), Expect = 0.052
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 239 ATSRLKQDYLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYY 385
A R++++ L DP + V ++ W + GP +SPY+GG +
Sbjct: 2 ALKRIQKELHDLGRDPPAQCSTGSVGDDLYHWQATIMGPPESPYQGGIF 50
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 33.9 bits (74), Expect = 0.16
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +2
Query: 353 PEKSPYEGGYYHGKIIFPREFPFKPPSIYMITP--NGRFKTNTRLCLSI---TDFHPDTW 517
P++ Y GG + KI P E+ PP + +T + + +CLSI W
Sbjct: 67 PQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGW 126
Query: 518 NPAWSISTILTGLLS 562
P +++ ++ GL+S
Sbjct: 127 RPTRNLTDVVHGLVS 141
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 33.9 bits (74), Expect = 0.16
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = +2
Query: 350 GPEKSPYEGGYYHGKIIFPREFPFKPPSIYMIT----PNGRFKTNTRLCLSITDFHPDTW 517
GP+ + YE G + ++ P ++PFK PSI + PN + T +CL + + W
Sbjct: 41 GPKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGT-VCLDVIN---QAW 96
Query: 518 NPAWSISTILTGLLSFML 571
+ ++ I L +L
Sbjct: 97 TALYDLTNIFDTFLPQLL 114
>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
protein Y81G3A.3 protein.
Length = 1696
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +2
Query: 410 EFPFKPPSIYMITPNGRFKTNTRLCLSITDFHPDTWNPAWSISTILTGLLSFMLEKTP 583
++P + P++ ++ P G K + + L+I DTW I+ + + F+ + TP
Sbjct: 83 DYPQRKPAVDLLDPQGLSKEDVQNLLTILRQMADTWEGCVVIAELAHRVREFLTDHTP 140
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 323 ILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKPPSIYMIT 448
+ W + GP ++PYE Y+ +I +P +PP++ T
Sbjct: 38 LTRWTASIIGPPRTPYESRIYNLQIQCGGNYPREPPTVRFTT 79
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 344 VKGPEKSPYEGGYYHGKIIFPREFPFKPPSI 436
+ GP +PYE G + + FP +P P I
Sbjct: 35 IAGPADTPYETGVFEVDLTFPDNYPNALPQI 65
>Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical
protein F42G4.3a protein.
Length = 603
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -1
Query: 839 AYKXTRTNRXVKIQFIXDCGSEVTSFAP-XS*FNNIASCRCFNCCSISST 693
++ + T + + I CG E+T P + N I CF C S T
Sbjct: 396 SFSSSTTRKIMNINICVGCGKEITGDQPGCNAMNQIFHVDCFKCGQCSKT 445
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,564,226
Number of Sequences: 27780
Number of extensions: 398801
Number of successful extensions: 1132
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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