Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_L18
(922 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 118 1e-27
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 73 4e-14
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 65 2e-11
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 64 2e-11
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 58 2e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 58 2e-09
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 56 7e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 55 1e-08
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 53 5e-08
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 52 2e-07
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 49 1e-06
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 49 1e-06
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 48 1e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 47 3e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 45 2e-05
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 44 4e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 39 9e-04
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 39 0.001
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 38 0.002
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 38 0.002
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 37 0.005
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 33 0.043
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 33 0.057
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 33 0.075
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 33 0.075
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 30 0.53
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo... 29 1.2
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 26 6.5
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 26 6.5
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 26 6.5
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 26 8.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 118 bits (284), Expect = 1e-27
Identities = 61/103 (59%), Positives = 75/103 (72%), Gaps = 5/103 (4%)
Frame = +2
Query: 617 PFKPKGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKXSRGDGPIALVLAPTRE 796
P + + WP+A+SG DMVGI++TGSGKTLSY LPAIVHIN QP S GDGPI LVLAPTRE
Sbjct: 147 PIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRE 206
Query: 797 LA----QQYXKFVINCNTQNSHTCLFGGAPKGPQ-QXLXXGVK 910
LA Q+ KF + +N TC++GG P+GPQ + L GV+
Sbjct: 207 LAVQIQQECTKFGKSSRIRN--TCVYGGVPRGPQIRDLIRGVE 247
Score = 101 bits (243), Expect = 1e-22
Identities = 44/87 (50%), Positives = 59/87 (67%)
Frame = +1
Query: 370 PGASLRKPKWDLSRLKPFKKDFYVPHLDVEKRPESDVEAWRSENEITLKGRNIPKPTLTF 549
PGA+L K W L PF+KDFY H +V R +++V +R E EI + G N+PKP TF
Sbjct: 65 PGANLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTF 124
Query: 550 DEAGFPDYVMDEIDKMGFAKPTPIQAQ 630
+EAGFP+YV+ E+ ++GF PTPIQ Q
Sbjct: 125 EEAGFPNYVLKEVKQLGFEAPTPIQQQ 151
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 73.3 bits (172), Expect = 4e-14
Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Frame = +2
Query: 638 PIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKXSRGDGPIALVLAPTRELAQQYXK 817
P SG D++G+A TGSGKT++++LP HI +Q G+GPIA+++ PTRELA Q +
Sbjct: 450 PAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFR 509
Query: 818 ----FVINCNTQNSHTCLFGGAP 874
F+ N + C +GGAP
Sbjct: 510 ECKPFLKLLNIR--ACCAYGGAP 530
Score = 51.2 bits (117), Expect = 2e-07
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +1
Query: 421 FKKDFYVPHLDVEKRPESDVEAWRSENE-ITLKGRNIPKPTLTFDEAGFPDYVMDEIDKM 597
FKKDFYV +++ ++V+ R+ + I ++G + PKP ++ + G + I+ +
Sbjct: 377 FKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSL 436
Query: 598 GFAKPTPIQAQGL 636
G+ KPT IQAQ +
Sbjct: 437 GYEKPTSIQAQAI 449
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 64.9 bits (151), Expect = 2e-11
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Frame = +2
Query: 617 PFKPKGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKXSRGDGPIALVLAPTRE 796
P + WP L+G D+VGIA TGSGKT+++ +PA+ ++N P LV++PTRE
Sbjct: 190 PIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNG--LSDNKSVPRVLVVSPTRE 247
Query: 797 LA-QQYXKF-VINCNTQNSHTCLFGGAPKGPQ 886
LA Q Y + T ++GGAPK Q
Sbjct: 248 LAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQ 279
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 64.5 bits (150), Expect = 2e-11
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Frame = +2
Query: 638 PIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKXSRGD---GPIALVLAPTRELAQQ 808
P+ L D++GIA TGSGKT ++I+P I+ I+ P + + GP A+VLAPTRELAQQ
Sbjct: 281 PVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQ 340
Score = 37.1 bits (82), Expect = 0.004
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +1
Query: 454 VEKRPESDVEAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDKMGFAKPTPIQ 624
+E D + + I++KG ++P P ++EAG P ++ + K+ + +P+ IQ
Sbjct: 220 LEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQ 276
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 58.0 bits (134), Expect = 2e-09
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Frame = +2
Query: 593 KWGLLSLHPFKPKGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKXSRGDGPIA 772
K G + P + K P+ L G D+VG+A TGSGKT ++++P I H+ + S A
Sbjct: 86 KKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANS---NTRA 142
Query: 773 LVLAPTRELAQQYXKFV--INCNTQNSHTCLFGGAPKGPQQXLXXG 904
L+L+P RELA Q K V + T + GG Q L G
Sbjct: 143 LILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSG 188
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 57.6 bits (133), Expect = 2e-09
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Frame = +2
Query: 638 PIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKXSRGDGPIALVLAPTRELAQQYXK 817
P AL G D++G A TGSGKTL++I+P I ++ + K + DG ALV++PTRELA Q +
Sbjct: 71 PSALKGRDILGAAKTGSGKTLAFIVPLIENLYRK-KWTSLDGLGALVISPTRELAIQTFE 129
Query: 818 FVINCNTQNSHTC--LFGG 868
++ +S + + GG
Sbjct: 130 TLVKIGRLHSFSAGLIIGG 148
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 56.0 bits (129), Expect = 7e-09
Identities = 30/72 (41%), Positives = 42/72 (58%)
Frame = +2
Query: 593 KWGLLSLHPFKPKGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKXSRGDGPIA 772
K G + P + + P+ L+ D++G+A TGSGKT ++ LP I + N P A
Sbjct: 63 KLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPF-----FA 117
Query: 773 LVLAPTRELAQQ 808
+VLAPTRELA Q
Sbjct: 118 VVLAPTRELAYQ 129
Score = 32.3 bits (70), Expect = 0.100
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 544 TFDEAGFPDYVMDEIDKMGFAKPTPIQAQGL 636
TF E G D + + +K+GF PTPIQ + +
Sbjct: 47 TFKELGVIDELCEACEKLGFKTPTPIQQEAI 77
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 55.2 bits (127), Expect = 1e-08
Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +2
Query: 638 PIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKXSRGD-GPIALVLAPTRELAQQ 808
P+AL G D+V A TGSGKT +Y++P + + Q + G AL+L PTRELAQQ
Sbjct: 46 PLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQ 103
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 53.2 bits (122), Expect = 5e-08
Identities = 29/70 (41%), Positives = 39/70 (55%)
Frame = +2
Query: 599 GLLSLHPFKPKGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKXSRGDGPIALV 778
G + P + P+ L D+V A TGSGKTL+Y+LP + + G G AL+
Sbjct: 20 GFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLG--ALI 77
Query: 779 LAPTRELAQQ 808
+APTRELA Q
Sbjct: 78 VAPTRELATQ 87
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 51.6 bits (118), Expect = 2e-07
Identities = 27/57 (47%), Positives = 37/57 (64%)
Frame = +2
Query: 638 PIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKXSRGDGPIALVLAPTRELAQQ 808
P+AL G D+VG A TGSGKT ++I+P + + +PK + L+L PTRELA Q
Sbjct: 291 PLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPK--KVPTTRVLILCPTRELAMQ 345
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 48.8 bits (111), Expect = 1e-06
Identities = 25/70 (35%), Positives = 42/70 (60%)
Frame = +2
Query: 599 GLLSLHPFKPKGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKXSRGDGPIALV 778
G ++ + + P L+G D++G A TGSGKTL++++P I + K +G ++
Sbjct: 108 GFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTI-EMLYALKFKPRNGTGVII 166
Query: 779 LAPTRELAQQ 808
++PTRELA Q
Sbjct: 167 ISPTRELALQ 176
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 48.8 bits (111), Expect = 1e-06
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Frame = +2
Query: 674 ASTGSGKTLSYILPAIVHINNQPK--XSRGDGPIALVLAPTRELAQQ 808
A TGSGKTL+Y+LP + + PK +R G A+++APTREL QQ
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQ 231
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 48.4 bits (110), Expect = 1e-06
Identities = 26/78 (33%), Positives = 43/78 (55%)
Frame = +2
Query: 617 PFKPKGWPIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKXSRGDGPIALVLAPTRE 796
P + + PIALSG D++ A G+GKT ++++P++ ++ + + L+L PTRE
Sbjct: 69 PIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRE 123
Query: 797 LAQQYXKFVINCNTQNSH 850
LA Q + C T H
Sbjct: 124 LALQTSQV---CKTLGKH 138
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 47.2 bits (107), Expect = 3e-06
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 647 LSGHDMVGIASTGSGKTLSYILPAIVHINNQPKXSRGDGPIALVLAPTRELAQQYXK--F 820
L G + +G A TGSGKT ++ LP I + P G AL+L PTRELA Q +
Sbjct: 42 LEGRNCIGGAKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFA 96
Query: 821 VINCNTQNSHTCLFGG 868
+ N H + GG
Sbjct: 97 ALGANLNLKHALIVGG 112
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 44.8 bits (101), Expect = 2e-05
Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +2
Query: 638 PIALSGHDMVGIASTGSGKTLSYILPAIVHI--NNQPKXSRGDGPIALVLAPTRELAQQ 808
P A G D++G A TGSGKTL++ +P + H N K + ALV+APTRELA Q
Sbjct: 154 PEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQ-----ALVVAPTRELAHQ 207
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 43.6 bits (98), Expect = 4e-05
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Frame = +2
Query: 647 LSGHDMVGIASTGSGKTLSYILPAIVHINNQPKXSRGDGPIALVLAPTRELAQQYXKFVI 826
L D++ A +G+GKT ++ + + I+ K + AL+LAPTRELAQQ K V+
Sbjct: 54 LGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQ-----ALILAPTRELAQQIQKVVV 108
Query: 827 ---NCNTQNSHTCLFGGAPKGPQQXLXXGV 907
+ H C+ G + L GV
Sbjct: 109 ALGDLMNVECHACIGGTLVRDDMAALQAGV 138
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 39.1 bits (87), Expect = 9e-04
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +2
Query: 638 PIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKXSRGDGPIALVLAPTRELAQQ 808
P S D++ A TGSGKT++Y+ P + + + G A+++APTREL +Q
Sbjct: 78 PTIGSKRDLLACAPTGSGKTIAYLFPILQKL----QLHVPGGYRAIIVAPTRELCEQ 130
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 38.7 bits (86), Expect = 0.001
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Frame = +2
Query: 470 NRMLKPGEVKMKLL*KVEIYQNQHLLLMRLVFQIMLWMK*IKWGLLSLHPFKP-----KG 634
N + EV++KL ++ N L ++ ++ L + +K G+ S+ KP K
Sbjct: 87 NLIPNKNEVRVKLA-DLQADPNSPLFSVKSFEELELKPELLK-GIYSMKFQKPSKIQEKA 144
Query: 635 WPIALSG--HDMVGIASTGSGKTLSYILPAIVHIN-NQPKXSRGDGPIALVLAPTRELAQ 805
P+ LS +M+G + +G+GKT ++ L + ++ + PK P A+ LAP+RELA+
Sbjct: 145 LPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPK------PQAICLAPSRELAR 198
Query: 806 QYXKFVINCNTQNSHTCLFG---GAPKG 880
Q V FG PKG
Sbjct: 199 QIMDVVTEMGKYTEVKTAFGIKDSVPKG 226
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 38.3 bits (85), Expect = 0.002
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +2
Query: 638 PIALSGHDMVGIASTGSGKTLSYILPAIVHINNQPKXSRGDGPIALVLAPTRELAQQYXK 817
P+ G D+ A+TGSGKTLSY++P + ++++ +V+ PTREL Q K
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR----CVVIVPTRELTVQVAK 223
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 38.3 bits (85), Expect = 0.002
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Frame = +2
Query: 617 PFKPKGWPIALSGHDMVGIASTGSGKTLSYILPAI-VHINNQPKX-----SRGDG----- 763
P + PI SG D++ A TGSGKT ++ P + + + P G G
Sbjct: 194 PVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRK 253
Query: 764 --PIALVLAPTRELAQQ 808
P L+LAPTREL Q
Sbjct: 254 AYPTTLILAPTRELVCQ 270
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 36.7 bits (81), Expect = 0.005
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Frame = +2
Query: 653 GHDMVGIASTGSGKTLSYILPAIVHINNQPKXSRGDGPIALVLAPTRELAQQYXKFVI-- 826
G D++ A +G+GKT ++ + + I+ + ++ AL+L+PTRELA Q V+
Sbjct: 58 GRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQ-----ALILSPTRELAVQIQNVVLAL 112
Query: 827 --NCNTQNSHTCLFGGAPKG 880
+ N Q H C+ GG G
Sbjct: 113 GDHMNVQ-CHACI-GGTSVG 130
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 33.5 bits (73), Expect = 0.043
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 674 ASTGSGKTLSYILPAIVHINNQPKXSRGDGPIALVLAPTRELAQQ 808
A TG+GKTL+++L A + +++L+PTRELA Q
Sbjct: 83 AKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQ 127
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 33.1 bits (72), Expect = 0.057
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +2
Query: 647 LSGHDMVGIASTGSGKTLSYILPAIVHINNQPKXSRGDGPIALVLAPTRELAQ 805
LSG D+ + TG GK+L Y LPA++ + SRG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 32.7 bits (71), Expect = 0.075
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +2
Query: 647 LSGHDMVGIASTGSGKTLSYILPAIVHINNQPKXSRGDGPIALVLAPTRELAQ 805
L+ +++ + TG GK+LS+++PA++ Q + + LVL P L Q
Sbjct: 1204 LNRMNLITVLPTGGGKSLSFLIPALIEKKRQ-TPGKVMNMVTLVLVPMMSLRQ 1255
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 32.7 bits (71), Expect = 0.075
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +2
Query: 647 LSGHDMVGIASTGSGKTLSYILPAIVHINNQPKXSRGDGPIALVLAPTRELAQ 805
L+ +++ + TG GK+LS+++PA++ Q + + LVL P L Q
Sbjct: 1204 LNRMNLITVLPTGGGKSLSFLIPALIEKKRQ-TPGKVMNMVTLVLVPMMSLRQ 1255
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 29.9 bits (64), Expect = 0.53
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 397 WD--LSRLKPFKKDFYVPHLDVEKRPESDVEAWRSENEITLKGRNIPKPT 540
WD LSR FK YVP+ DV S + W + + NIP P+
Sbjct: 505 WDYFLSRKDEFKNPNYVPYDDVIMPDPSSLRWWSASFAQPDENMNIPSPS 554
>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 552 IKSKCWFWYISTFQSNFIFTSPGFNIRFRSLFNV*MWDIKIFLKWF*T 409
I KCW YI+ + + F F G+N + + NV + D ++W T
Sbjct: 198 IPEKCWNEYITAYDNKFSFPEIGWNNKL--VGNVYLIDDSCKIRWLGT 243
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 26.2 bits (55), Expect = 6.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 112 LNTKFNIYEKKVPTFN 159
LN +N+Y+K VP+FN
Sbjct: 500 LNRLYNLYKKNVPSFN 515
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 481 EAWRSENEITLKGRNIPKPTLTFDEAGFPDYVMDEIDK 594
E + N ++ N+ K ++T +A FP DEID+
Sbjct: 927 EVYEIPNVTIIENGNMFKESMTLSKAAFPLKPFDEIDR 964
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 510 SNFIFTSPGFNIRFRSLFNV 451
SNF FTS FN+ +R +F V
Sbjct: 375 SNFSFTSVSFNLPYRMVFAV 394
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 518 PFKVISFSLLQASTSDSGLFSTSKCGT*KSFLNGFKRLKSH 396
PF + + A T D+ L + CGT S L+ F + H
Sbjct: 158 PFSPEIYEAVHALTLDTKLRTVQSCGTNLSLLDNFYYYQDH 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,488
Number of Sequences: 5004
Number of extensions: 62389
Number of successful extensions: 206
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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