Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_L16
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    98   1e-21
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    30   0.52 
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    29   0.90 
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    26   8.4  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 1/127 (0%)
 Frame = +1

Query: 145 MSWQDYVDKQLMASRCVTKAAIAGHDGN-VWAKSEGFEISKDEVAKIVAGFENESLLTSG 321
           MSWQ YVD  L+ +  + +AAI    G+ VWA S GF +S  E+  + AGF++   +   
Sbjct: 1   MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGT 60

Query: 322 GVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGE 501
           G+ +AG +YI +      I  KL K G+ C+ T+  +++S Y E   P +AA + E L +
Sbjct: 61  GIILAGQKYITIRAEGRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALAD 120

Query: 502 YLITCGY 522
           YL+  GY
Sbjct: 121 YLVGVGY 127


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 14/44 (31%), Positives = 30/44 (68%), Gaps = 5/44 (11%)
 Frame = +2

Query: 680 SLVCTCDYFVD--SGPFLYAHRLLXII---ITA**IKFVLKFCF 796
           +++C C+YF+D  +GPFL +++ L ++    ++  ++ VLKF +
Sbjct: 322 AIMCRCEYFLDMLAGPFLESNQELPVLSLPFSSSVVEIVLKFLY 365


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -3

Query: 368 SVPLR*MYRVPAIVTPPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAFVTH 189
           +VPL   Y    + T   + S   SKP+    +S  + + P +  H++PS  ++A   ++
Sbjct: 487 NVPLYPAYNSSPVQTRTSLFSSRLSKPSNPIVSSVSQANAPKNALHSMPSPTSLANLPSN 546

Query: 188 L 186
           L
Sbjct: 547 L 547


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 227 MCGQSRKASKFQKMKWQR 280
           MC  S++   FQK KW R
Sbjct: 19  MCNYSKRLDTFQKKKWPR 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,430,248
Number of Sequences: 5004
Number of extensions: 69349
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)