Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_L14
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    29   0.66 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.2  

>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 44  FDTAGVFYFHKKITKSSIFSIFTYINLL 127
           F   GVF+F + + K S F++ T+I LL
Sbjct: 233 FMALGVFFFRRSLKKVSYFNLATFITLL 260


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/67 (26%), Positives = 18/67 (26%), Gaps = 3/67 (4%)
 Frame = +3

Query: 627 PPXPPXXXKKXXFFXPPXXXXXPPPXX---FXXXGXPPPPXXXFFXXXGXPPPXXXFXXX 797
           PP PP          PP     PPP         G  PPP          P P       
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR 398

Query: 798 XXPPXPP 818
             P  PP
Sbjct: 399 SAPALPP 405


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/49 (28%), Positives = 14/49 (28%)
 Frame = +2

Query: 674 PPXXFXXPPXXFXXXXXPPPPXXFXFXXXGXPPPPXXFXXXXXPPXXPP 820
           PP      P         PPP          PPPP        PP  PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 767 PPPPXXFXXXXXPPXXPPXXF 829
           PPPP  F     PP  PP  +
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGY 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,925
Number of Sequences: 5004
Number of extensions: 38684
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)