Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_L13
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 0.92
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 30 2.1
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 30 2.1
09_02_0603 - 11150739-11150746,11150791-11151340 29 3.7
05_01_0142 - 940421-940701,941262-941574 29 3.7
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 4.9
10_03_0019 - 7123502-7123673,7124145-7124226,7124228-7124394,712... 29 6.5
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 29 6.5
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 29 6.5
01_06_1682 - 39130696-39131705,39132355-39132583 29 6.5
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.6
07_03_1136 + 24218601-24218734,24218769-24219906 28 8.6
03_03_0118 + 14597863-14597929,14598844-14599806,14599909-145999... 28 8.6
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.5 bits (68), Expect = 0.92
Identities = 22/60 (36%), Positives = 23/60 (38%)
Frame = +1
Query: 682 PXPPFSLWGKVGXFPXPPXXGFPXPGXGXPPPXGGVFXKTPPFXPXXGPFXGKIXFXXPP 861
P PP G G P PP G P PPP GG+ PP P G G PP
Sbjct: 1087 PLPP--TLGDYGVAPPPPSIGAGAP--PPPPPPGGITGVPPP--PPIGGLGGHQAPPAPP 1140
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/46 (43%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = +1
Query: 682 PXPPFSLWGKVGXFPXPPXXGFP--XPG--XGXPPPXGGVFXKTPP 807
P PP G VG P PP P PG G PPP GG PP
Sbjct: 1185 PPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPP 1230
>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +1
Query: 724 PXPPXXGFPXPGXGXP--PPXGGVFXKTPPFXPXXGPFXG 837
P PP G P P G P PP GG+ PP P P G
Sbjct: 1664 PAPPGMGGPPPPMGMPGMPPMGGM--GMPPMGPGPMPAYG 1701
>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +1
Query: 724 PXPPXXGFPXPGXGXP--PPXGGVFXKTPPFXPXXGPFXG 837
P PP G P P G P PP GG+ PP P P G
Sbjct: 1664 PAPPGMGGPPPPMGMPGMPPMGGM--GMPPMGPGPMPAYG 1701
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/52 (34%), Positives = 20/52 (38%)
Frame = +1
Query: 715 GXFPXPPXXGFPXPGXGXPPPXGGVFXKTPPFXPXXGPFXGKIXFXXPPRXK 870
G F PP GFP PPP G F P P G F PP+ +
Sbjct: 33 GNFALPPPFGFP-----PPPPPGSTFVPLPQSGVPPPPPLGSF-FVPPPQSR 78
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 682 PXPPFSLWGKVGXFPXPPXXGFPXPGXGXPPPXG 783
P PP + G +P P G+P PG G PPP G
Sbjct: 55 PPPPGAYPPPPGAYP--PQHGYPQPG-GYPPPGG 85
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 682 PXPPFSLWGKVGXFPXPPXXGFPXPGXGXPPP 777
P PP + GK P PP P P PPP
Sbjct: 750 PPPPPLMTGKKAPAPPPPPPQAPKPPGTVPPP 781
>10_03_0019 -
7123502-7123673,7124145-7124226,7124228-7124394,
7124569-7125182
Length = 344
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 638 PXXPPCFQPCXFXGXLSPLFPFGER 712
P PCF C G ++ LFPF R
Sbjct: 11 PISAPCFLLCFLLGFVAGLFPFAHR 35
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 682 PXPPFSLWGKVGXFPXPPXXGFPXPGXGXPPPXGGVFXKTPP 807
P PP +WG+ PP P P G PPP + PP
Sbjct: 48 PPPPPQMWGQA-----PPP---PQPAYGQPPPAQAGYYGAPP 81
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/42 (40%), Positives = 17/42 (40%)
Frame = +1
Query: 706 GKVGXFPXPPXXGFPXPGXGXPPPXGGVFXKTPPFXPXXGPF 831
G P PP G P PPP G F PP P GPF
Sbjct: 110 GPFAAAPQPPSQG---PFGTAPPPSQGPFGTAPP--PSQGPF 146
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Frame = +1
Query: 682 PXPPFSLWGKV--GXFPXPPXXGFPXPGXGXPPPXGGVFXKTPPF 810
P PPF+ F PP FP P P P + PP+
Sbjct: 197 PSPPFNYKSPPLPNQFSPPPFNKFPPPSHQYPSPPQSSYHSPPPY 241
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 298 NESAN---ARGEAVCVLGALPLPRSLTRCAR 381
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 823 PXXGXKGGFXXKPPXVGGGSXNPXXENPXGG 731
P G +GG +PP GGG P P GG
Sbjct: 160 PPGGGRGGALGRPPGGGGGGGGP-GRAPGGG 189
>03_03_0118 +
14597863-14597929,14598844-14599806,14599909-14599936,
14600288-14600666
Length = 478
Score = 28.3 bits (60), Expect = 8.6
Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Frame = +1
Query: 688 PPFSLWGKVGXFPX----PPXXGFPXPGXGXPPPXGGVFXKTPPFXPXXGPFXG 837
PP L VG P PP G P G PP GG TPP P G
Sbjct: 374 PPAGLTPPVGTSPPTDFSPPAAGTTPPAGGFTPPAGG--FGTPPLGGFGTPPSG 425
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,938,624
Number of Sequences: 37544
Number of extensions: 397814
Number of successful extensions: 956
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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