Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_L13
(878 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.36
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.36
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.47
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.47
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.47
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.1
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 29 3.3
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 29 3.3
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 29 3.3
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 3.3
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 3.3
Z70307-10|CAA94328.1| 276|Caenorhabditis elegans Hypothetical p... 29 4.4
AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.36
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Frame = +1
Query: 682 PXPPFSLWGK--VGXFPXPPXXGFPXPGXGXPPP-------XGGVFXKTPPFXPXXGPF- 831
P PP S +G +G P PP G PG PPP G++ PP P P
Sbjct: 318 PPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSG 377
Query: 832 XGKIXFXXPP 861
G I PP
Sbjct: 378 HGMIPPPPPP 387
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +1
Query: 682 PXPPFSLWGKVGXFPXPPXXGFPXPGXG---XPPPXGGVF-XKTPPFXPXXGPFXGKIXF 849
P PP G G P PP F PG G PPP G + PP P P G +
Sbjct: 308 PGPP----GMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMY 363
Query: 850 XXPP 861
PP
Sbjct: 364 PPPP 367
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.36
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Frame = +1
Query: 682 PXPPFSLWGK--VGXFPXPPXXGFPXPGXGXPPP-------XGGVFXKTPPFXPXXGPF- 831
P PP S +G +G P PP G PG PPP G++ PP P P
Sbjct: 328 PPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSG 387
Query: 832 XGKIXFXXPP 861
G I PP
Sbjct: 388 HGMIPPPPPP 397
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +1
Query: 682 PXPPFSLWGKVGXFPXPPXXGFPXPGXG---XPPPXGGVF-XKTPPFXPXXGPFXGKIXF 849
P PP G G P PP F PG G PPP G + PP P P G +
Sbjct: 318 PGPP----GMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMY 373
Query: 850 XXPP 861
PP
Sbjct: 374 PPPP 377
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.3 bits (70), Expect = 0.47
Identities = 24/67 (35%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Frame = +1
Query: 676 GXPXPPFSLWGK--VGXFPXPPXXGFPXP-GXGXPPPXGGVFXKTPPFXPXXG-PFXGKI 843
G P PP G G P P G P P G G PPP + P P G P G
Sbjct: 295 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSP 354
Query: 844 XFXXPPR 864
PPR
Sbjct: 355 PTGRPPR 361
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = +1
Query: 706 GKVGXFPXPPXXGFPXPGXGXPPPXGGVFXKTPPFXPXXGPFXGKIXFXXPPR 864
G G F P G G PPP GG F G F G+ F P+
Sbjct: 50 GNQGGFSGSPQQGGFGGRTGSPPPFGGFSGAPQGFGGNQGGFGGQTGFSGAPQ 102
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/56 (32%), Positives = 20/56 (35%)
Frame = +1
Query: 676 GXPXPPFSLWGKVGXFPXPPXXGFPXPGXGXPPPXGGVFXKTPPFXPXXGPFXGKI 843
G P PP + G P PP P P G PP PP P P G +
Sbjct: 262 GSPPPP-----RTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSL 312
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.47
Identities = 24/67 (35%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Frame = +1
Query: 676 GXPXPPFSLWGK--VGXFPXPPXXGFPXP-GXGXPPPXGGVFXKTPPFXPXXG-PFXGKI 843
G P PP G G P P G P P G G PPP + P P G P G
Sbjct: 316 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSP 375
Query: 844 XFXXPPR 864
PPR
Sbjct: 376 PTGRPPR 382
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = +1
Query: 706 GKVGXFPXPPXXGFPXPGXGXPPPXGGVFXKTPPFXPXXGPFXGKIXFXXPPR 864
G G F P G G PPP GG F G F G+ F P+
Sbjct: 71 GNQGGFSGSPQQGGFGGRTGSPPPFGGFSGAPQGFGGNQGGFGGQTGFSGAPQ 123
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/56 (32%), Positives = 20/56 (35%)
Frame = +1
Query: 676 GXPXPPFSLWGKVGXFPXPPXXGFPXPGXGXPPPXGGVFXKTPPFXPXXGPFXGKI 843
G P PP + G P PP P P G PP PP P P G +
Sbjct: 283 GSPPPP-----RTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSL 333
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.3 bits (70), Expect = 0.47
Identities = 24/67 (35%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Frame = +1
Query: 676 GXPXPPFSLWGK--VGXFPXPPXXGFPXP-GXGXPPPXGGVFXKTPPFXPXXG-PFXGKI 843
G P PP G G P P G P P G G PPP + P P G P G
Sbjct: 301 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSP 360
Query: 844 XFXXPPR 864
PPR
Sbjct: 361 PTGRPPR 367
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = +1
Query: 706 GKVGXFPXPPXXGFPXPGXGXPPPXGGVFXKTPPFXPXXGPFXGKIXFXXPPR 864
G G F P G G PPP GG F G F G+ F P+
Sbjct: 56 GNQGGFSGSPQQGGFGGRTGSPPPFGGFSGAPQGFGGNQGGFGGQTGFSGAPQ 108
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/56 (32%), Positives = 20/56 (35%)
Frame = +1
Query: 676 GXPXPPFSLWGKVGXFPXPPXXGFPXPGXGXPPPXGGVFXKTPPFXPXXGPFXGKI 843
G P PP + G P PP P P G PP PP P P G +
Sbjct: 268 GSPPPP-----RTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSL 318
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/64 (37%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Frame = +1
Query: 682 PXPPFSLWGKVGXFPXPPXXGFPXPGXG----XPPPXGGVFXKTPPFXPXXGPFXGKIXF 849
P PP L G P PP G P G PPP GG PP P G F G
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG--CPPPPPPPPPGGFKGGPPP 786
Query: 850 XXPP 861
PP
Sbjct: 787 PPPP 790
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/51 (37%), Positives = 20/51 (39%)
Frame = +1
Query: 676 GXPXPPFSLWGKVGXFPXPPXXGFPXPGXGXPPPXGGVFXKTPPFXPXXGP 828
G P PP G P PP GF G PPP G+F P P P
Sbjct: 757 GPPPPPPPPGGCPPPPPPPPPGGFK--GGPPPPPPPGMFAPMAPVIPDYLP 805
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = +1
Query: 724 PXPPXXGFPXPGXGXPPPXGGVFXKTPPFXPXXGPF 831
P PP G P P PPP G F PP P G F
Sbjct: 761 PPPPPGGCPPP---PPPPPPGGFKGGPPPPPPPGMF 793
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 676 GXPXPPFSLWGKVGXFPXPPXXGFPXPGXGXPPP 777
G P PP L G P PP G P G PPP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPP 744
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/64 (37%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Frame = +1
Query: 682 PXPPFSLWGKVGXFPXPPXXGFPXPGXG----XPPPXGGVFXKTPPFXPXXGPFXGKIXF 849
P PP L G P PP G P G PPP GG PP P G F G
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG--CPPPPPPPPPGGFKGGPPP 786
Query: 850 XXPP 861
PP
Sbjct: 787 PPPP 790
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/51 (37%), Positives = 20/51 (39%)
Frame = +1
Query: 676 GXPXPPFSLWGKVGXFPXPPXXGFPXPGXGXPPPXGGVFXKTPPFXPXXGP 828
G P PP G P PP GF G PPP G+F P P P
Sbjct: 757 GPPPPPPPPGGCPPPPPPPPPGGFK--GGPPPPPPPGMFAPMAPVIPDYLP 805
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = +1
Query: 724 PXPPXXGFPXPGXGXPPPXGGVFXKTPPFXPXXGPF 831
P PP G P P PPP G F PP P G F
Sbjct: 761 PPPPPGGCPPP---PPPPPPGGFKGGPPPPPPPGMF 793
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 676 GXPXPPFSLWGKVGXFPXPPXXGFPXPGXGXPPP 777
G P PP L G P PP G P G PPP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPP 744
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/64 (37%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Frame = +1
Query: 682 PXPPFSLWGKVGXFPXPPXXGFPXPGXG----XPPPXGGVFXKTPPFXPXXGPFXGKIXF 849
P PP L G P PP G P G PPP GG PP P G F G
Sbjct: 312 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG--CPPPPPPPPPGGFKGGPPP 369
Query: 850 XXPP 861
PP
Sbjct: 370 PPPP 373
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/51 (37%), Positives = 20/51 (39%)
Frame = +1
Query: 676 GXPXPPFSLWGKVGXFPXPPXXGFPXPGXGXPPPXGGVFXKTPPFXPXXGP 828
G P PP G P PP GF G PPP G+F P P P
Sbjct: 340 GPPPPPPPPGGCPPPPPPPPPGGFK--GGPPPPPPPGMFAPMAPVIPDYLP 388
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = +1
Query: 724 PXPPXXGFPXPGXGXPPPXGGVFXKTPPFXPXXGPF 831
P PP G P P PPP G F PP P G F
Sbjct: 344 PPPPPGGCPPP---PPPPPPGGFKGGPPPPPPPGMF 376
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +1
Query: 676 GXPXPPFSLWGKVGXFPXPPXXGFPXPGXGXPPP 777
G P PP L G P PP G P G PPP
Sbjct: 294 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPP 327
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +1
Query: 730 PPXXGFPXPGXGXPPPXGGVFXKTPPFXPXXGPFXGKIXFXXPP 861
PP G P P G PPP G+ P P G F PP
Sbjct: 94 PPPIGMPPPPLGMPPPHIGL-GAAPYAVPPPMSLLGPPPFSVPP 136
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +1
Query: 730 PPXXGFPXPGXGXPPPXGGVFXKTPPFXPXXGPFXGKIXFXXPP 861
PP G P P G PPP G+ P P G F PP
Sbjct: 117 PPPIGMPPPPLGMPPPHIGL-GAAPYAVPPPMSLLGPPPFSVPP 159
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +1
Query: 730 PPXXGFPXPGXGXPPPXGGVFXKTPPFXPXXGPFXGKIXFXXPP 861
PP G P P G PPP G+ P P G F PP
Sbjct: 367 PPPIGMPPPPLGMPPPHIGL-GAAPYAVPPPMSLLGPPPFSVPP 409
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/59 (38%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Frame = +1
Query: 715 GXFPXPPXXGFPXP-----GXGXPPPXGGVFXKTPPFXPXXGPFXGKIXFXXPPRXKKF 876
G FP PP FP P G G PPP F PP GP G F PP F
Sbjct: 294 GFFPPPPRGHFPPPPPHFMGRGMPPP----FMPPPPHF-GMGPPRG---FMPPPHPMMF 344
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/59 (38%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Frame = +1
Query: 715 GXFPXPPXXGFPXP-----GXGXPPPXGGVFXKTPPFXPXXGPFXGKIXFXXPPRXKKF 876
G FP PP FP P G G PPP F PP GP G F PP F
Sbjct: 294 GFFPPPPRGHFPPPPPHFMGRGMPPP----FMPPPPHF-GMGPPRG---FMPPPHPMMF 344
>Z70307-10|CAA94328.1| 276|Caenorhabditis elegans Hypothetical
protein C39E9.9 protein.
Length = 276
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/62 (29%), Positives = 24/62 (38%)
Frame = +1
Query: 676 GXPXPPFSLWGKVGXFPXPPXXGFPXPGXGXPPPXGGVFXKTPPFXPXXGPFXGKIXFXX 855
G P P F L+ + + PP P G P P G + PP P F ++
Sbjct: 107 GQPGPDFPLFDQSLIYQRPPCIRCPVGEPGPPGPDGEPGEQGPPGPPGVDNF--EVGHDG 164
Query: 856 PP 861
PP
Sbjct: 165 PP 166
>AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical
protein ZK973.9 protein.
Length = 233
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = +1
Query: 676 GXPXPPFSLWGKVGXFPXPPXXGFPXPGXGXPPPXGGVFXKTPP 807
G P P S G+ +P PP G P G PPP G PP
Sbjct: 185 GQPAPQMS--GQRMPYPYPPQ-GMPGYPGGPPPPPHGYEGYPPP 225
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,447,004
Number of Sequences: 27780
Number of extensions: 296265
Number of successful extensions: 734
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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