Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_L11
(915 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 40 4e-04
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 36 0.011
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 31 0.17
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 30 0.40
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 30 0.53
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 28 1.6
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 27 2.8
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 3.7
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M... 27 3.7
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 27 4.9
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 4.9
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 4.9
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 26 6.5
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 6.5
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 8.6
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 40.3 bits (90), Expect = 4e-04
Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Frame = +2
Query: 371 TDWEAKEAHYQRELDEARARATQMEKTMRWWSDCTANWREKWSKVRTERNKAREEVKALK 550
T A+ Q+E++ + Q++++ SD +E++ ++++E+ + +E+ K
Sbjct: 1447 TSKNAENEAMQKEIESLKDSNHQLQESAS--SDAEQITKEQFEQLKSEKERTEKELADSK 1504
Query: 551 NKVEILTKELGAV--KTEKNELEQQLGELRRDNDKLL 655
N++E L E KTE + LE+++ ELR D + L+
Sbjct: 1505 NELEHLQSEAVDADGKTEISNLEKEIHELRSDKEGLV 1541
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 35.5 bits (78), Expect = 0.011
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Frame = +2
Query: 404 RELDEARARATQMEKTMRWWS---DCTANWREKWSKVRTERNKAREEVKALKNKVEILTK 574
RE D+A + + E W + A W++ + + E KAREE K +N ++ K
Sbjct: 136 REEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKEWRNSMDEWRK 195
Query: 575 ELGAVKTEKNELEQQLGELRRDNDKLLSIGESRI 676
+ + +E + + E R+ D+ + R+
Sbjct: 196 SMDEWRKSMDEWRKSMDEWRKSTDEWRKSTDERL 229
Score = 30.7 bits (66), Expect = 0.30
Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Frame = +2
Query: 374 DWEAKEAHYQRELDEARARATQMEKTMRWWSDCTANWR---EKWSKVRTERNKAREE-VK 541
+W+ + E +AR + +M W WR ++W K E K+ +E K
Sbjct: 164 EWKKAREEDKAEWKKAREEDKEWRNSMDEWRKSMDEWRKSMDEWRKSMDEWRKSTDEWRK 223
Query: 542 ALKNKVEILTKELGAVKTEKNELEQQLGELRRDNDKL 652
+ ++E L + + + ++ L L R D++
Sbjct: 224 STDERLENLLNIVREILDVQRDMRNDLSNLTRKVDRM 260
Score = 30.3 bits (65), Expect = 0.40
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Frame = +2
Query: 404 RELDEARARATQMEKTMRWWS---DCTANWREKWSKVRTERNKAREEVKALKNKVEILTK 574
RE D+A + + E W + A W++ + + E KAREE KA K K
Sbjct: 125 REEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDK 184
Query: 575 ELGAVKTEKNELEQQLGELRRDNDK-LLSIGESRIVTADLTEDTVELRRKNIVS 733
E + +E + + E R+ D+ S+ E R T + + T E R +N+++
Sbjct: 185 EW---RNSMDEWRKSMDEWRKSMDEWRKSMDEWRKSTDEWRKSTDE-RLENLLN 234
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +2
Query: 359 RYTNTDWEAKEAHYQRELDEARARATQMEKTMRWWSDCTANWREKW-SKVRTERNKAREE 535
R + +W +++ +DE R + K+M W T WR+ ++ N RE
Sbjct: 180 REEDKEWRNSMDEWRKSMDEWRKSMDEWRKSMDEWRKSTDEWRKSTDERLENLLNIVREI 239
Query: 536 V---KALKNKVEILTKEL 580
+ + ++N + LT+++
Sbjct: 240 LDVQRDMRNDLSNLTRKV 257
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 31.5 bits (68), Expect = 0.17
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Frame = +2
Query: 485 REKWSKVRTERNKAREEVKALKNKVEILTKELGAVKTEKNELEQQLGE-LRRDNDKLLSI 661
+ K + + ++ N + ++ L+ ++ + + VKTE +E Q E L +++ K+ S+
Sbjct: 925 QSKHTSLESQYNYSLRNIEQLQAASKLAEEMVERVKTEYDEYRLQTSESLEKNHLKITSL 984
Query: 662 GESRIVTADLTEDTVELRRKNIVSPNEQRQRASLXSHK 775
E RIV + LR +NI +E R L +K
Sbjct: 985 -EQRIVILQDEIASSSLRCENITKDSETRVALLLEENK 1021
Score = 28.3 bits (60), Expect = 1.6
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Frame = +2
Query: 380 EAKEAHYQRELDEARARATQ-----MEKTMRWWSDCTANWREKWSKVRTERNKAREEVKA 544
E + + YQ++L R +K + N ++ S+ +K EE+
Sbjct: 683 ELENSKYQQQLSTDRLTNANNDVEAFKKEAKELRSINQNLQDIISRQDQRASKFAEELLH 742
Query: 545 LKNKVEILTKELGAVKTEKNELEQQLGELRRDNDKLLS 658
+ + E L EL A K EK+ ++ L +NDKLL+
Sbjct: 743 VNSLAERLKGELNASKGEKDLRKRTQERLISENDKLLA 780
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 30.3 bits (65), Expect = 0.40
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = +2
Query: 473 TANWREKWSKVRTERNKAREEVKALKN---KVEILTKELGAVKTEKNELEQQLGELR 634
+++ R+K+ + +R+ RE+++ ++ IL +L + +KN LEQ L ++R
Sbjct: 1407 SSDTRKKYDSIIKKRDSLREDLEKFRSTGKNSSILEAQLREITKQKNMLEQSLDDMR 1463
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 29.9 bits (64), Expect = 0.53
Identities = 25/121 (20%), Positives = 47/121 (38%)
Frame = +2
Query: 296 MAQSSHGGSHRRNRDHDGGGLRYTNTDWEAKEAHYQRELDEARARATQMEKTMRWWSDCT 475
+ S+ + RD + L+Y + ++ +R+L E T +E +
Sbjct: 816 LLSSTQNDKQLKKRDAEIIELKYELKKQQNSKSEVERDLVETNNSLTAVENLLTTERAIA 875
Query: 476 ANWREKWSKVRTERNKAREEVKALKNKVEILTKELGAVKTEKNELEQQLGELRRDNDKLL 655
+ E + + + K + E L +E ++K NELE +L E + LL
Sbjct: 876 LDKEEILRRTQERLANIEDSFSETKQQNENLQRESASLKQINNELESELLEKTSKVETLL 935
Query: 656 S 658
S
Sbjct: 936 S 936
Score = 26.2 bits (55), Expect = 6.5
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Frame = +2
Query: 374 DWEAKEAHYQRELDEARARATQMEKTMRWWSDCTANWREKWSKVRTERNK---AREEVKA 544
+++ K Q +L+ + T ++ + D T N + + + K A E K
Sbjct: 1169 NYKKKYEGLQLDLEGLKDVDTNFQELSKKHRDLTFNHESLLRQSASYKEKLSLASSENKD 1228
Query: 545 LKNKVEILTK---ELGAVKTEKNELEQQLGELRRDNDKLLSIGESRIVTADL-TEDTVEL 712
L NKV LTK EL ++ ELE+++ L + +L E A + + D EL
Sbjct: 1229 LSNKVSSLTKQVNELSPKASKVPELERKITNLMHEYSQLGKTFEDEKRKALIASRDNEEL 1288
Query: 713 RRKNIVSPNEQRQRASLXSHKL 778
R ++ S E +++ + K+
Sbjct: 1289 R--SLKSELESKRKLEVEYQKV 1308
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/87 (21%), Positives = 38/87 (43%)
Frame = +2
Query: 398 YQRELDEARARATQMEKTMRWWSDCTANWREKWSKVRTERNKAREEVKALKNKVEILTKE 577
Y+ L E R + T ++ + EK+ + + ++ EEVK+L+ K + +
Sbjct: 361 YRTILYETRNKKTLVQNLLNSLEGKLQAHLEKFEQTERDISEKNEEVKSLREKAAKVKND 420
Query: 578 LGAVKTEKNELEQQLGELRRDNDKLLS 658
+ K + EQQ ++ LL+
Sbjct: 421 CTSEKKTRQSYEQQTVKIEEQLKFLLN 447
Score = 25.8 bits (54), Expect = 8.6
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +2
Query: 524 AREEVKALKNKVEILTKELGAVKTEKNELEQQLGELRRDNDKLLS-IGESRIVTADLTED 700
A E++ L ++ +IL EL + ++N+L + + DKL + E+R + + +
Sbjct: 526 ALEKINQLTSEKQILQVELDMLLNKENDLINDVESSQSSLDKLRNDAEENRNILSSKLKV 585
Query: 701 TVELR-RKNIVSPNEQRQRASL 763
+L+ K VS N +R++ ++
Sbjct: 586 LSDLKGEKKDVSKNIERKKETV 607
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.5 bits (58), Expect = 2.8
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Frame = +2
Query: 401 QRELDEARARATQMEKT----MRWWSDCTANWREKWSKVRTERNKAREEVKALKNKVEIL 568
QRE DEA A +M+KT + S T +R++ +V+ K +K ++ ++ L
Sbjct: 25 QREADEAAAEIEKMQKTSLDERKELSSKTKEFRKQPDEVKLGEMKGL--LKLYQSGIDSL 82
Query: 569 TKELGAVKTEKNELEQQLGELRRDNDKLLSIGESRIVTADLTED 700
TK + + + + LGE+ D LL + + T ED
Sbjct: 83 TKRAKSAEATFFRVYETLGEV-PDPYPLLIEAANNLKTQKQIED 125
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = -3
Query: 784 IGELVRV*GSPLSLFVWGDNVLPA*LDSVFGEIGRYDSTFTYTEQLVVVSPQFAELL 614
+G+LV+ +P +L ++ +P + E+G + TYT Q ++P + LL
Sbjct: 461 LGDLVKPYNTPFALKIYETANVPNKVVMCLSELGDFGKLATYTSQ-QNITPDYVSLL 516
>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 3.7
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 356 LRYTNTDWEAKEAH-YQRELDEARARATQMEKTMRWWSDCTANWREKWSKVRTERNKARE 532
LR D AK H +Q++++ T+ +KT W S + ++ + + E
Sbjct: 68 LRDEKIDELAKLEHLWQKQINSITQMRTKFDKTKSWLSSKRNTLNKSKESLQKDEAEYVE 127
Query: 533 EVKALKNKVE 562
+LK KVE
Sbjct: 128 LANSLKTKVE 137
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.6 bits (56), Expect = 4.9
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +2
Query: 404 RELDEARARATQME-KTMRWWSDCTANWREKWSKVRTERNKAREEVKALKNKVEILTKEL 580
R LD + Q+E +++R +D T+ E+ K+ ++ +EE L E K L
Sbjct: 346 RRLDR-QIMTIQIELESLRKETDTTSV--ERREKLESKLTDLKEEQDKLSAAWEEERKLL 402
Query: 581 GAVKTEKNELEQQLGELRR 637
++K K ELEQ EL R
Sbjct: 403 DSIKKAKTELEQARIELER 421
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.6 bits (56), Expect = 4.9
Identities = 25/113 (22%), Positives = 51/113 (45%)
Frame = +2
Query: 350 GGLRYTNTDWEAKEAHYQRELDEARARATQMEKTMRWWSDCTANWREKWSKVRTERNKAR 529
G LR + +E +++++D+A A +K + N E+ K + NK+
Sbjct: 831 GYLRKQIERTKLEETSFKKKIDDA-VLANNEQKLKLTKLNFQVNELEQLEK---DINKSS 886
Query: 530 EEVKALKNKVEILTKELGAVKTEKNELEQQLGELRRDNDKLLSIGESRIVTAD 688
E+ K K+ ++ + G+ NELE + +L D ++ + I+ A+
Sbjct: 887 EDCDLQKKKLLEVSSKQGSQAPFLNELESEYEKLEADIQEMAQKSRTEILEAN 939
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.6 bits (56), Expect = 4.9
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = +2
Query: 485 REKWSKVRTERNKAREEVKALKNKVEILTKELGAVKTEKNELEQQLGELRRDNDKLLSIG 664
REK + R + K RE+ K K+ KEL ++ E+ L++Q + KL
Sbjct: 100 REKERQQREQEKKLREQEKIAAKKM----KELEKLEKERIRLQEQQRRKEERDQKLREKE 155
Query: 665 ESRIVTAD--LTEDTVELRRKNIVSPNEQRQRA 757
E++ + + L ++ +L+ N + +++ A
Sbjct: 156 EAQRLRQEQILNKERQQLKLNNFFTKGVEKRIA 188
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 26.2 bits (55), Expect = 6.5
Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Frame = +2
Query: 401 QRELDEARARATQMEKTMRWWSDCTA----NWREKWSKVRTERNKAREEVKALKNKVEIL 568
+++L E Q+E++++ S N ++ E+ KA +E + K+
Sbjct: 206 EQQLQELSVHNQQLEESIKQVSSSIELEKINAEQRLQISELEKLKAAQEERI--EKLSSN 263
Query: 569 TKELGAVKTEKNELEQQLGELRRDNDKLLSI 661
+ + +K EKN+LE +L DK+ ++
Sbjct: 264 NRNVEILKEEKNDLESKLYRFEEYRDKVATL 294
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 6.5
Identities = 18/82 (21%), Positives = 47/82 (57%), Gaps = 13/82 (15%)
Frame = +2
Query: 497 SKVRTERNKAREEVKALKNKVEILTKELGAVKT-----------EKNELEQQLGELRRDN 643
S + K +E++K L+ + IL EL + ++ +KNELE++L E++++
Sbjct: 952 SSYNKQTTKLQEKIKWLERERSILIDELESYRSNQFNYQNNLVQDKNELEERLKEIQKEL 1011
Query: 644 DKLLS--IGESRIVTADLTEDT 703
+ + + ++ ++T+++T+++
Sbjct: 1012 EVYNNHFMKQAELMTSNVTDES 1033
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.8 bits (54), Expect = 8.6
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +2
Query: 488 EKWSKVRTERNKA----REEVKALKNKVEILTKELGAVKTEKNELEQQLGELRRDNDKLL 655
EK+ K E ++ +EEV+ L +++ L++ E +EL+++L L +N+K
Sbjct: 581 EKFEKTIRENEESISLFKEEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAK 640
Query: 656 SIGESRIVTADLTE 697
S+ T++L E
Sbjct: 641 EDSTSK--TSNLLE 652
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,095,497
Number of Sequences: 5004
Number of extensions: 60076
Number of successful extensions: 235
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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