Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_L09
         (936 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa...    79   9e-16
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    51   2e-07
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    34   0.033
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    29   0.71 

>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 79.0 bits (186), Expect = 9e-16
 Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 4/146 (2%)
 Frame = +2

Query: 179 LSKSVELTFELPDSAEECFY-QTMDKDTAASLEYQVISGGQYDVSVKIEAPNRQIIYQQE 355
           L+ ++ELTF+L +  ++C+Y  +          Y V SGG +DV   I+AP+++ +   +
Sbjct: 17  LASAIELTFKLENQEKQCYYLDSFHTGEKTHFTYAVQSGGSFDVDYMIKAPSQKTVALGK 76

Query: 356 KMQYDSHQFTALASGDYKVCFSNEFSTFSHKLVYMELNVGPEQPLPGV-GDHATVLTQ-- 526
           K +     FT    G+Y+ CF N  STF+ K+V ME+ +  E  LP +  D A    +  
Sbjct: 77  KRRQADVFFTLEEKGEYEFCFDNHMSTFTDKIVTMEITMENELSLPALTRDEAKDYKKDS 136

Query: 527 LETSAEEIHSALNRIIDHQTHHRLRE 604
           ++++  EI +AL+ I   Q + + RE
Sbjct: 137 MQSTVLEISTALSEIDRVQNYFKTRE 162


>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 35/140 (25%), Positives = 58/140 (41%)
 Frame = +2

Query: 227 ECFYQTMDKDTAASLEYQVISGGQYDVSVKIEAPNRQIIYQQEKMQYDSHQFTALASGDY 406
           ECFY+ +  +   S+ YQ   GG   VS+ I  P  QI++Q+       + FT    G Y
Sbjct: 32  ECFYENLRNNDQMSVTYQTNVGGDQLVSMSIYNPAGQIMHQEVPNSMAQYSFTVKNPGKY 91

Query: 407 KVCFSNEFSTFSHKLVYMELNVGPEQPLPGVGDHATVLTQLETSAEEIHSALNRIIDHQT 586
             CF N+      K V   ++      +    +       L     ++H  ++++   Q 
Sbjct: 92  MYCFYNDALDGESKEVLFNVH----GVIYISDEDLDANNPLLGKVRQLHDTISKVKHEQE 147

Query: 587 HHRLREAQGRKRAEDLNEKV 646
           +   RE   R  AE  N++V
Sbjct: 148 YFVARERIHRNTAESTNDRV 167


>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 33.9 bits (74), Expect = 0.033
 Identities = 20/108 (18%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
 Frame = +2

Query: 329 NRQIIYQQEKMQYDSHQFTALASGDYKVCF--SNEFSTFSHKLVYMELNVGPEQPLPGVG 502
           N  +IY+ +    ++ +FT    G +++C+  +++ + FS     + +++  +     + 
Sbjct: 76  NNHLIYKNDLRSNEAVRFTTTNEGTHRICYLSTSDGAWFSSTKTRLHVDLASDDKYNLIA 135

Query: 503 DHATVLTQLETSAEEIHSALNRIIDHQTHHRLREAQGRKRAEDLNEKV 646
                   L      +++ L  I+  Q   R RE   R  +E  N +V
Sbjct: 136 SSEDEAKDLTDRVAALNTRLESILGEQMLQRSREMTFRDTSESANSRV 183


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
 Frame = -1

Query: 519 RTVA*SPTPGRGCSGPTFSSIYTSLCENVLNSLLKHTL*SPDARAVNWCESYCIFSC*YI 340
           R+   SPT       PT +    +  E V N+L K+   S   R     + Y   S  Y+
Sbjct: 460 RSTTTSPTSAVASPAPTENEDSNAAIERVANTLRKNPTISRRTRRAGTMDRYATASSDYM 519

Query: 339 ICLLGA--SIFTLTSYCPPE--ITW---YSNEAAVSLSIV 241
              LG+  ++ TL+    P+   TW   + N + +S SIV
Sbjct: 520 ESNLGSLPNLSTLSLQSGPDSTATWHPEFPNSSGLSASIV 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,830
Number of Sequences: 5004
Number of extensions: 51642
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)