Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_L09
         (936 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0873 - 32372143-32372287,32372678-32372754,32372863-323730...    34   0.14 
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312     33   0.33 
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442...    31   1.3  
01_01_0556 + 4090432-4090500,4091414-4092030,4092408-4092533,409...    31   1.3  
07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910...    30   3.0  
02_01_0146 + 1046247-1046511,1046702-1046865,1047205-1047498           29   7.0  
03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465...    28   9.3  
01_01_0145 + 1327172-1327362,1327491-1328169                           28   9.3  

>02_05_0873 -
           32372143-32372287,32372678-32372754,32372863-32373072,
           32374645-32374869
          Length = 218

 Score = 34.3 bits (75), Expect = 0.14
 Identities = 28/152 (18%), Positives = 60/152 (39%), Gaps = 5/152 (3%)
 Frame = +2

Query: 206 ELPDSAEECFYQTMDKDTAASLEYQVI----SGGQYDVSVKIEAPNRQIIYQQEKMQYDS 373
           +LP S  +C  + +  +     +Y ++          ++VK+ +P    ++  E      
Sbjct: 35  DLPQSGTKCVSEEIQSNVVVLADYALMYESHPSSHPTIAVKVTSPYGNTLHHNENATVGQ 94

Query: 374 HQFTALASGDYKVCF-SNEFSTFSHKLVYMELNVGPEQPLPGVGDHATVLTQLETSAEEI 550
             FT   +G+Y  CF  +     S   + ++  +G       V      +  +E    ++
Sbjct: 95  FAFTTSEAGNYLACFWIDSAEKGSGISINLDWKIGIAAKDWDVIAKKEKIEGVELELRKL 154

Query: 551 HSALNRIIDHQTHHRLREAQGRKRAEDLNEKV 646
             A+  I  +  + + REA+ R  +E  N +V
Sbjct: 155 EVAVQSIHQNMIYLKAREAEMRTVSEKTNARV 186


>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
          Length = 232

 Score = 33.1 bits (72), Expect = 0.33
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +2

Query: 257 TAASLEYQVISGGQYDVSVKIEAPNRQIIYQQEKMQYDSHQFTALASGDYKVCF 418
           +++S   Q +    + VS+++ +P    ++  E +Q  +  FTA  +GDY  CF
Sbjct: 70  SSSSSSAQPLLPESHRVSLRVTSPYGNSLHYSENVQSGNFAFTASEAGDYLACF 123


>09_04_0359 +
           16941904-16942110,16943636-16943785,16944084-16944293,
           16944376-16944452,16944554-16944698
          Length = 262

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 296 QYDVSVKIEAPNRQIIYQQEKMQYDSHQFTALASGDYKVCFS 421
           ++    K+ +P   I++ ++K+      FT   +G+Y  CFS
Sbjct: 113 RFGTPAKVTSPFGDIVHHKQKVSTGQFSFTTAEAGNYLACFS 154


>01_01_0556 +
           4090432-4090500,4091414-4092030,4092408-4092533,
           4092619-4092895,4093021-4093251
          Length = 439

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 247 GQGYGCFIGVPSNFWRTV*RKRKNRSS*QTNYISARED 360
           G   GC   +P  +WR + R R+N     TN +S+  D
Sbjct: 158 GYTIGCVATLPHLYWRFLHRNRQNTEQESTNQVSSERD 195


>07_03_1385 +
           26189034-26189294,26189427-26189636,26191016-26191092,
           26191196-26191340
          Length = 230

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 305 VSVKIEAPNRQIIYQQEKMQYDSHQFTALASGDYKVCF 418
           +S+++ +P    ++  E +   +  FTA  +GDY  CF
Sbjct: 84  ISLRVTSPYGNSVHYAENVPSGNFAFTATEAGDYLACF 121


>02_01_0146 + 1046247-1046511,1046702-1046865,1047205-1047498
          Length = 240

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = +2

Query: 176 VLSKSVELTFELPDSAEECFYQTMDKDTAASLEYQVISGGQYDVSVKIEAPNRQIIYQQE 355
           +LSKS+ L     + A E F Q    D+ A  E+       YD  VK+  PN   +    
Sbjct: 175 LLSKSIFLISAGGNDAFEFFSQNKSPDSTAIQEFCEAFISTYDSHVKVRDPNYDPVPSSF 234

Query: 356 KM 361
           KM
Sbjct: 235 KM 236


>03_02_0913 +
           12344096-12344125,12344284-12345970,12346243-12346573,
           12346712-12347567,12347760-12347883,12348469-12348688,
           12348771-12349229,12349318-12349519
          Length = 1302

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 281 VISGGQYDVSVKIEAPNRQIIYQQEKMQYDSHQ 379
           +IS G Y   +K E PNR I      M+ +SH+
Sbjct: 317 MISDGSYSGLIKCEQPNRNIYEFTATMELNSHR 349


>01_01_0145 + 1327172-1327362,1327491-1328169
          Length = 289

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 460 GTKCWTGAASSWCRRSC-NCSYTVGDI-CR 543
           GT     AASSW  R+C +C+  +GDI CR
Sbjct: 68  GTPRAAPAASSWMDRACPSCNEPIGDIRCR 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,117,361
Number of Sequences: 37544
Number of extensions: 294882
Number of successful extensions: 762
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)