Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_L04
         (909 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       24   7.3  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    28   8.9  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 23.8 bits (49), Expect(2) = 7.3
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = +1

Query: 376 PXXXXEXPXGFXGPXPXPPPXGXGXKXPXGXPG 474
           P      P G     P PPP   G   P   PG
Sbjct: 362 PSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPG 394



 Score = 23.0 bits (47), Expect(2) = 7.3
 Identities = 11/40 (27%), Positives = 12/40 (30%)
 Frame = +1

Query: 157 PPPXXKXRAXXXXXXPXXNXXPPPIXXTPSXXXXXXXXPP 276
           PPP    +A      P     PPP    P         PP
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPP 365


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/48 (33%), Positives = 16/48 (33%)
 Frame = +1

Query: 331  PPXXXXXXGGXXKXXPXXXXEXPXGFXGPXPXPPPXGXGXKXPXGXPG 474
            PP      GG            P G  G  P PPP G G   P G  G
Sbjct: 1188 PPRGHGGVGGPPTPPGAPAPPMPPGVPG-GPPPPPGGRGLPAPPGGRG 1234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,899,632
Number of Sequences: 37544
Number of extensions: 188360
Number of successful extensions: 270
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)