Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_L04
         (909 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    30   2.0  
Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    29   6.1  

>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 397 PXGFXGPXPXPPPXGXGXKXPXGXP 471
           P G  G  P PPP G G   P G P
Sbjct: 709 PPGIPGYPPAPPPPGVGPPPPQGIP 733


>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = +1

Query: 391 EXPXGFXGPXPXPPPXGXGXKXPXGXPGXXKF*XKXGXXGXP 516
           + P G  GP   P   G G   P G PG      + G  G P
Sbjct: 270 QGPPGLAGPDGQPGHGGGGQPGPQGPPGDDGHPGEDGGAGGP 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,065,358
Number of Sequences: 27780
Number of extensions: 143564
Number of successful extensions: 690
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)