Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_L03
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomy...   147   2e-36
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    29   1.2  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    27   3.7  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   4.9  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   4.9  
SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of RNA-me...    26   8.5  

>SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 228

 Score =  147 bits (356), Expect = 2e-36
 Identities = 66/138 (47%), Positives = 97/138 (70%)
 Frame = +1

Query: 346 KDAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKPG 525
           ++AFF+ H+MV +PE++I  +ADAG + + FH E  +   E+  +  E GM VG A+KP 
Sbjct: 63  EEAFFDCHLMVIEPERYIDQLADAGASLFCFHYEATEKHEEIISRAHEKGMLVGCALKPK 122

Query: 526 TPVSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPST 705
           TPV  +  ++   DMVL+MTVEPG GGQ FM   + KV++LR+ YP L++EVDGG+   T
Sbjct: 123 TPVEVILPFVEKLDMVLVMTVEPGKGGQSFMPECLPKVEFLRKKYPTLNVEVDGGLSLKT 182

Query: 706 INCCANAGANMIVSGTAI 759
           ++  A+AGAN+IV+GTA+
Sbjct: 183 VDAAADAGANVIVAGTAV 200



 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 25/48 (52%), Positives = 35/48 (72%)
 Frame = +3

Query: 168 LKALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFG 311
           ++A I PS+L  D + L +E  ++L  G+D+LH+DVMD QFVPNLT G
Sbjct: 2   VQAKIAPSLLAGDFANLEKEVGRMLKYGSDWLHVDVMDAQFVPNLTIG 49


>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 580 MTVEPGFGGQKFMENQMAKV-QYLRENYPLLDIEVDG 687
           + + PG G  ++M+  MAKV +Y R+N   + I+ DG
Sbjct: 116 IVIGPGLGRDEWMQEIMAKVIEYARKNDMPMVIDADG 152


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 248 WSRLFTFRCNGWSVCT 295
           WSR F   C G+SVCT
Sbjct: 6   WSRNFLCSCRGFSVCT 21


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 423 DSSISHWCYPLLWFLNHHVSFKKGIFYFSSKALH 322
           D+ I +  YP    L+ H+S KK I YFS+K  H
Sbjct: 419 DNLIDNLKYPQS--LDDHLSSKKPISYFSNKLTH 450


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +3

Query: 153 KMTRHLKALIGPSILNADLSQLYEESQKLLD-NGADY----LHLDVMDGQFVPNLTFGH 314
           K   HLK +I  + LNA+  QLY E   L+   G  Y     +L+ +  QF  + +FG+
Sbjct: 779 KQHPHLKIIIMSATLNAEKFQLYFEGSNLITIPGKTYPVHRFYLEDILSQFGNDKSFGN 837


>SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of
           RNA-mediated gene silencing |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 666 TGY*SRWWCRAINNKLLCQCRSQHDSLRDSHNWISRPSCYYKILRST 806
           +GY +   C+ I   L        D  +D   WIS    YYKIL+++
Sbjct: 89  SGYCTPKNCKIIQECLAGLVELTIDGEKDEDTWISFKLPYYKILQTS 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,514
Number of Sequences: 5004
Number of extensions: 63133
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)